使用python发邮件

最新推荐文章于 2024-07-23 13:59:11 发布

fanyucai1

最新推荐文章于 2024-07-23 13:59:11 发布

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本文链接：https://blog.csdn.net/fanyucai1/article/details/103995130

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import smtplib
from email.mime.text import MIMEText
from email.header import Header
from email.mime.multipart import MIMEMultipart
from email.utils import formataddr
import argparse
import os
import re
import subprocess

def run(cnv_vcf,purity,prefix):
    infile=open(cnv_vcf,"r")
    outfile=open("%s.final.CNV.tsv"%(prefix),"w")
    outfile.write("#Chr\tStart\tend\tRef\tType\tGene\tCopyNumber\n")
    num=0
    for line in infile:
        line=line.strip()
        if not line.startswith("#"):
            array=line.split("\t")
            if array[4]=="<DUP>" or array[4]=="<DEL>":
                num+=1
                p1=re.compile(r'END=(\d+)')
                p2=re.compile(r'ANT=(\S+)')
                end=p1.findall(line)[0]
                gene=p2.findall(line)[0]
                X=float(purity)
                Y=float(array[-1])
                n = ((200 * Y) - 2 * (100 - X)) / X
                outfile.write("%s\t%s\t%s\t%s\t%s\t%s\t%s\n"%(array[0],array[1],end,array[3],array[4],gene,n))
    outfile.close()
    ####################################################发送文本
    if num==0:
    	mail_host = "smtp.exmail.qq.com"
    	sender = "yucaifan@****.com"
		password = "******"
    	receivers = ["ycz@****.com","bmc@*****.com"]
        subprocess.check_call("rm -rf %s.final.CNV.tsv"%(prefix),shell=True)
        info="sample %s not find DUP and DEL."%(prefix)
        message = MIMEText(info, 'plain', 'utf-8')
        message['From'] = "From BMC" + sender  # 发送者
        message['To'] = ",".join(receivers)
        message['Subject'] = Header('TSO500样本%s的CNV分析结果' % (prefix), 'utf-8')
        try:
            smtpObj = smtplib.SMTP(mail_host, 25)
            smtpObj.login(sender, password)
            smtpObj.sendmail(sender, receivers, message.as_string())
            print("邮件发送成功")
        except smtplib.SMTPException:
            print("Error: 无法发送邮件")
	################################################################
    if os.path.exists("%s.final.CNV.tsv"%(prefix)):
    	mail_host = "smtp.exmail.qq.com"
	   	sender = "*****@**"
		password = "****"
		receivers = ["***@**.com","**@***.com"]
		message = MIMEMultipart()
		message.attach(MIMEText('sample %s find DUP and DEL.'%(prefix), 'plain', 'utf-8'))
		message['From'] = "From BMC"+sender  # 发送者
		message['To'] =",".join(receivers)
		message['Subject'] = Header('TSO500样本%s的CNV分析结果' % (prefix), 'utf-8')
		att1 = MIMEText(open('%s.final.CNV.tsv'%(prefix), 'rb').read(), 'base64', 'utf-8')
		att1["Content-Type"] = 'application/octet-stream'
		att1["Content-Disposition"] = 'attachment; filename='+"%s.final.CNV.tsv"%(prefix)
		message.attach(att1)
		try:
		    smtpObj = smtplib.SMTP(mail_host, 25)
		    smtpObj.login(sender, password)
		    smtpObj.sendmail(sender, receivers, message.as_string())
		    print("邮件发送成功")
		except smtplib.SMTPException:
		    print("Error: 无法发送邮件")
if __name__=="__main__":
    parser=argparse.ArgumentParser()
    parser.add_argument("-cv","--cnv_vcf",help="cnv vcf",required=True)
    parser.add_argument("-t","--purity",help="tumor purity",required=True)
    parser.add_argument("-p","--prefix",help="prefix of output",required=True)
    args=parser.parse_args()
    run(args.cnv_vcf,args.purity,args.prefix)