下载3日龄不同品种猪（杜洛克、野生型猪、莱芜猪）单细胞数据

最新推荐文章于 2024-09-12 20:58:18 发布

红鲤绿与鱼

最新推荐文章于 2024-09-12 20:58:18 发布

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分类专栏：单细胞数据分析文章标签： linux

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整理单细胞下载编号

数据下载链接

/gsa2/CRA011788/CRR819867/CRR819867_f1.fastq.gz
/gsa2/CRA011788/CRR819867/CRR819867_r2.fastq.gz
/gsa2/CRA011788/CRR819874/CRR819874_f1.fastq.gz
/gsa2/CRA011788/CRR819874/CRR819874_r2.fastq.gz
/gsa2/CRA011788/CRR819869/CRR819869_f1.fastq.gz
/gsa2/CRA011788/CRR819869/CRR819869_r2.fastq.gz
/gsa2/CRA011788/CRR819871/CRR819871_f1.fastq.gz
/gsa2/CRA011788/CRR819871/CRR819871_r2.fastq.gz
/gsa2/CRA011788/CRR819870/CRR819870_f1.fastq.gz
/gsa2/CRA011788/CRR819870/CRR819870_r2.fastq.gz
/gsa2/CRA011788/CRR819873/CRR819873_f1.fastq.gz
/gsa2/CRA011788/CRR819873/CRR819873_r2.fastq.gz
/gsa2/CRA011788/CRR819875/CRR819875_f1.fastq.gz
/gsa2/CRA011788/CRR819875/CRR819875_r2.fastq.gz
/gsa2/CRA011788/CRR819868/CRR819868_f1.fastq.gz
/gsa2/CRA011788/CRR819868/CRR819868_r2.fastq.gz
/gsa2/CRA011788/CRR819872/CRR819872_f1.fastq.gz
/gsa2/CRA011788/CRR819872/CRR819872_r2.fastq.gz

#批量下载数据，每条文件路径之间以空格隔开
# [Llocal_path]参数用于指定本地的下载目录，如果不指定，则使用当前配置的下载目录
/workspace/home/pig/animal_geneticB/software/edgeturbo-client/edgeturbo download /gsa2/CRA011788/CRR819867/CRR819867_f1.fastq.gz /gsa2/CRA011788/CRR819867/CRR819867_r2.fastq.gz /gsa2/CRA011788/CRR819874/CRR819874_f1.fastq.gz /gsa2/CRA011788/CRR819874/CRR819874_r2.fastq.gz /gsa2/CRA011788/CRR819869/CRR819869_f1.fastq.gz /gsa2/CRA011788/CRR819869/CRR819869_r2.fastq.gz /gsa2/CRA011788/CRR819871/CRR819871_f1.fastq.gz /gsa2/CRA011788/CRR819871/CRR819871_r2.fastq.gz /gsa2/CRA011788/CRR819870/CRR819870_f1.fastq.gz /gsa2/CRA011788/CRR819870/CRR819870_r2.fastq.gz /gsa2/CRA011788/CRR819873/CRR819873_f1.fastq.gz /gsa2/CRA011788/CRR819873/CRR819873_r2.fastq.gz /gsa2/CRA011788/CRR819875/CRR819875_f1.fastq.gz /gsa2/CRA011788/CRR819875/CRR819875_r2.fastq.gz /gsa2/CRA011788/CRR819868/CRR819868_f1.fastq.gz /gsa2/CRA011788/CRR819868/CRR819868_r2.fastq.gz /gsa2/CRA011788/CRR819872/CRR819872_f1.fastq.gz /gsa2/CRA011788/CRR819872/CRR819872_r2.fastq.gz L/workspace/home/pig/animal_geneticB/Analysis/py/data/3_day_snRNAseq

重命名，脚本如下，命名为rename.sh

for file in *f1.fastq.gz; do
    prefix="${file%_f1.fastq.gz}"
    mv "$file" "${prefix}_S1_L001_R1_001.fastq.gz"
done

for file in *r2.fastq.gz; do
    prefix="${file%_r2.fastq.gz}"
    mv "$file" "${prefix}_S1_L001_R2_001.fastq.gz"
done