在国家生物信息中心下载单细胞和普通转录组数据

最新推荐文章于 2024-08-09 11:36:05 发布

红鲤绿与鱼

最新推荐文章于 2024-08-09 11:36:05 发布

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文章标签：数据库服务器 linux 学习

本文链接：https://blog.csdn.net/m0_60116853/article/details/140042707

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根据文章提供的ID，进入官网

GSA
请添加图片描述

请添加图片描述

每个都这样操作，最后整理在一块：

/gsa2/CRA011069/CRR785672/CRR785672_f1.fq.gz
/gsa2/CRA011069/CRR785672/CRR785672_r2.fq.gz
/gsa2/CRA011069/CRR785673/CRR785673_f1.fq.gz
/gsa2/CRA011069/CRR785673/CRR785673_r2.fq.gz
/gsa2/CRA011069/CRR785674/CRR785674_f1.fq.gz
/gsa2/CRA011069/CRR785674/CRR785674_r2.fq.gz
/gsa2/CRA011069/CRR785675/CRR785675_f1.fq.gz
/gsa2/CRA011069/CRR785675/CRR785675_r2.fq.gz
/gsa2/CRA011069/CRR785676/CRR785676_f1.fq.gz
/gsa2/CRA011069/CRR785676/CRR785676_r2.fq.gz
/gsa2/CRA011069/CRR785677/CRR785677_f1.fq.gz
/gsa2/CRA011069/CRR785677/CRR785677_r2.fq.gz
/gsa2/CRA011069/CRR785678/CRR785678_f1.fq.gz
/gsa2/CRA011069/CRR785678/CRR785678_r2.fq.gz
/gsa2/CRA011069/CRR785679/CRR785679_f1.fq.gz
/gsa2/CRA011069/CRR785679/CRR785679_r2.fq.gz

下载数据

wget https://ngdc.cncb.ac.cn/ettrans/download/edgeturbo-client.linux.latest.cncb.tar.gz
tar -zxvf edgeturbo-client.linux.latest.cncb.tar.gz
#未配置环境变量
#批量下载数据，每条文件路径之间以空格隔开
/workspace/home/pig/animal_geneticB/software/edgeturbo-client/edgeturbo download /gsa2/CRA011059/CRR784297/CRR784297_f1.fastq.gz /gsa2/CRA011059/CRR784297/CRR784297_r2.fastq.gz /gsa2/CRA011059/CRR784296/CRR784296_f1.fastq.gz /gsa2/CRA011059/CRR784296/CRR784296_r2.fastq.gz /gsa2/CRA011059/CRR784295/CRR784295_f1.fastq.gz /gsa2/CRA011059/CRR784295/CRR784295_r2.fastq.gz /gsa2/CRA011059/CRR784294/CRR784294_f1.fastq.gz /gsa2/CRA011059/CRR784294/CRR784294_r2.fastq.gz L/workspace/home/pig/animal_geneticB/Analysis/py/data/sn_RNAseq
# [Llocal_path]参数用于指定本地的下载目录，如果不指定，则使用当前配置的下载目录
/workspace/home/pig/animal_geneticB/software/edgeturbo-client/edgeturbo download /gsa2/CRA011069/CRR785672/CRR785672_f1.fq.gz /gsa2/CRA011069/CRR785672/CRR785672_r2.fq.gz /gsa2/CRA011069/CRR785673/CRR785673_f1.fq.gz /gsa2/CRA011069/CRR785673/CRR785673_r2.fq.gz /gsa2/CRA011069/CRR785674/CRR785674_f1.fq.gz /gsa2/CRA011069/CRR785674/CRR785674_r2.fq.gz /gsa2/CRA011069/CRR785675/CRR785675_f1.fq.gz /gsa2/CRA011069/CRR785675/CRR785675_r2.fq.gz /gsa2/CRA011069/CRR785676/CRR785676_f1.fq.gz /gsa2/CRA011069/CRR785676/CRR785676_r2.fq.gz /gsa2/CRA011069/CRR785677/CRR785677_f1.fq.gz /gsa2/CRA011069/CRR785677/CRR785677_r2.fq.gz /gsa2/CRA011069/CRR785678/CRR785678_f1.fq.gz /gsa2/CRA011069/CRR785678/CRR785678_r2.fq.gz /gsa2/CRA011069/CRR785679/CRR785679_f1.fq.gz /gsa2/CRA011069/CRR785679/CRR785679_r2.fq.gz L/workspace/home/pig/animal_geneticB/Analysis/py/data/RNA_seq

请添加图片描述下载完成！