icommands 玉米282群体下载

Transferring Data with iCommands and Command Line - CyVerse Learning HomeDocumentation for CyVerse Platforms and Educationhttps://learning.cyverse.org/ds/icommands/#icommands-installation-for-linux

安装

#Ubuntu 20.04:

echo "deb http://security.ubuntu.com/ubuntu bionic-security main" \
  | sudo tee /etc/apt/sources.list.d/bionic-security.list
wget -qO - https://packages.irods.org/irods-signing-key.asc | sudo apt-key add -
echo "deb [arch=amd64] https://packages.irods.org/apt/ bionic main" \
  | sudo tee /etc/apt/sources.list.d/renci-irods.list
sudo apt update
cat <<'EOF' | sudo tee > /etc/apt/preferences.d/irods
Package: irods-*
Pin: version 4.2.8
Pin-Priority: 1001
EOF
sudo apt install irods-icommands

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官网注册

bash-3.2$ iinit
One or more fields in your iRODS environment file (irods_environment.json) are
missing; please enter them.
Enter the host name (DNS) of the server to connect to: data.cyverse.org
Enter the port number: 1247
Enter your irods user name: cyverse-user
Enter your irods zone: iplant
Those values will be added to your environment file (for use by
other i-commands) if the login succeeds.
 
Enter your current iRODS password:
bash-3.2$

进入目录下载

icd /iplant/home/shared/panzea/hapmap3/hmp321/imputed/


iget -r -P uplifted_APGv4

#v显示细节

Index of /Zm-B73-REFERENCE-NAM-5.0/chain_fileshttps://download.maizegdb.org/Zm-B73-REFERENCE-NAM-5.0/chain_files/用于转化坐标