医学图像处理 格式转换 dicom转为nii格式

import SimpleITK as sitk
import os
import pydicom
import matplotlib.pyplot as plt


# 避免因路径中含中文导致SimpleITK无法读取


def dcm2nii(dcms_path, nii_path):
   
    reader = sitk.ImageSeriesReader()
    dicom_names = reader.GetGDCMSeriesFileNames(dcms_path)
    reader.SetFileNames(dicom_names)
    image2 = reader.Execute()
    
    # 获取dicom文件基本信息
    image_array = sitk.GetArrayFromImage(image2)  # z, y, x
    origin = image2.GetOrigin()  # x, y, z
    spacing = image2.GetSpacing()  # x, y, z
    direction = image2.GetDirection()  # x, y, z
    # 将array转为img，并保存为.nii.gz
    image3 = sitk.GetImageFromArray(image_array)
    image3.SetSpacing(spacing)
    image3.SetDirection(direction)
    image3.SetOrigin(origin)
    sitk.WriteImage(image3, nii_path)


'''需要单个命名并且是.nii格式结尾'''
dcms_path = r'E:\data\20xxxx\S0000001'  # dicom序列文件所在路径

nii_path = r'E:\data\data_nii\xxxx.nii'  # 所需.nii文件保存路径

dcm2nii(dcms_path, nii_path)