3dTshift处理数据时,如果该数据里不包含每一层图像采集的时间信息,那么将无法进行层间时间校正,
即出现以下警告:
++ 3dTshift: AFNI version=AFNI_2011_12_21_1014 (Apr 22 2015) [64-bit]
*+ WARNING: dataset is already aligned in time!
*+ WARNING: ==>> output dataset is just a copy of input dataset
解决办法:3dTshift增加-tpattern 选项,告诉程序,切片时间是如何排列的。
For example if nz = 5 and TR = 1000, then the inter-slice
time is taken to be dt = TR/nz = 200. In this case, the
slices are offset in time by the following amounts:
S L I C E N U M B E R
tpattern 0 1 2 3 4 Comment
--------- --- --- --- --- --- -------------------------------
altplus 0 600 200 800 400 Alternating in the +z direction
alt+z2 400 0 600 200 800 Alternating, but starting at #1
altminus 400 800 200 600 0 Alternating in the -z direction
alt-z2 800 200 600 0 400 Alternating, starting at #nz-2
seqplus 0 200 400 600 800 Sequential in the +z direction
seqminus 800 600 400 200 0 Sequential in the -z direction
If @filename is used for tpattern, then nz ASCII-formatted numbers
are read from the file. These indicate the time offsets for each
slice. For example, if 'filename' contains
0 600 200 800 400
then this is equivalent to 'altplus' in the above example.
(nz = number of slices in the input dataset)
备注:利用dcm2niix将 DICOM 图像转化为nii时,查看.json文件可知,每个TR中层面时间信息。

本文介绍使用3dTshift处理MRI数据时遇到的问题及解决方案。当数据缺失层间时间信息时,程序会发出警告并直接复制输入数据作为输出。解决方法是通过-tpattern选项指定切片时间排列方式。
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