如何在 surface file画ROI（tksurfer）

GIfTI

it is the surface-file format complement to the NIfTI volume-file format.
In Freesurfer, the GUI utilities freeview and tksurfer can open and display .gii files directly.

mris_convert

The tool ‘mris_convert’ can be used to convert between native Freesurfer surface formats (like lh.pial) and gifti (lh.pial.gii) for exchange with other packages.
See the output of ‘mris_convert -help’ for examples. ie. mris_convert lh.pial lh.pial.gii

第一步：

export SUBJECTS_DIR=`pwd`

第二步:利用tksurfer打开标准模板：fsaverage

 tksurfer fsaverage lh inflated

第三步：load label

第四步：疯狂地左击鼠标画出roi,然后点击红色的按钮
第五步：To fill the label, click once in the middle of the polygon and then click on the “Custom Fill”

This action will raise a dialog box with several fill options. Select the one that says “Up to and including paths” and then click the fill button. As a result, the ROI should appear like this:

第六步：select the label using Tools -> Labels -> Mark Selected Label.

第七步：保存导出label文件

备注：如果需要把label文件转换成gii格式的文件，需要利用mris_convert命令。