dump

dump expected KR(期望,平均的矩阵)
dump norm KR
dump observed NONE(观测的矩阵)
dump norm VC (dump the VC normalization vector)
dump oe NONE ( dump the O/E matrix with no normalization。观测除以期望的矩阵)
dump domains
The “dump” command for matrices takes 8 arguments and produces text in sparse matrix format (row, column, value). Hi-C matrices are symmetric. Here are the arguments:
The kind of matrix you would like to dump. Must be one of observed/oe.
The kind of normalization you want to apply. Must be one of NONE/VC/VC_SQRT/KR. VC is vanilla coverage, VC_SQRT is square root of vanilla coverage, and KR is Knight-Ruiz or Balanced normalization.
(For vectors, the arguments are mostly the same. Only one chromosome is allowed (since normalization vectors are calculated intrachromosomally).
https://github.com/aidenlab/juicer/wiki/Data-Extraction

  • 0
    点赞
  • 0
    收藏
    觉得还不错? 一键收藏
  • 0
    评论
评论
添加红包

请填写红包祝福语或标题

红包个数最小为10个

红包金额最低5元

当前余额3.43前往充值 >
需支付:10.00
成就一亿技术人!
领取后你会自动成为博主和红包主的粉丝 规则
hope_wisdom
发出的红包
实付
使用余额支付
点击重新获取
扫码支付
钱包余额 0

抵扣说明:

1.余额是钱包充值的虚拟货币,按照1:1的比例进行支付金额的抵扣。
2.余额无法直接购买下载,可以购买VIP、付费专栏及课程。

余额充值