dump expected KR(期望,平均的矩阵)
dump norm KR
dump observed NONE(观测的矩阵)
dump norm VC (dump the VC normalization vector)
dump oe NONE ( dump the O/E matrix with no normalization。观测除以期望的矩阵)
dump domains
The “dump” command for matrices takes 8 arguments and produces text in sparse matrix format (row, column, value). Hi-C matrices are symmetric. Here are the arguments:
The kind of matrix you would like to dump. Must be one of observed/oe.
The kind of normalization you want to apply. Must be one of NONE/VC/VC_SQRT/KR. VC is vanilla coverage, VC_SQRT is square root of vanilla coverage, and KR is Knight-Ruiz or Balanced normalization.
(For vectors, the arguments are mostly the same. Only one chromosome is allowed (since normalization vectors are calculated intrachromosomally).
https://github.com/aidenlab/juicer/wiki/Data-Extraction
dump
最新推荐文章于 2024-06-12 09:58:13 发布