实现在win10上安装fmriprep

一、fmriprep介绍

fMRIPrep is a BIDS App that employs a standardized pre-processing pipeline on BIDS-compliant fMRI data. This pipeline utilizes the leading tools from different fMRI software packages (AFNI, FSL, ANTs, Freesurfer, nipype) to perform specific steps during the pre-processing. Rather than being limited to an individual package, fMRIPrep will leverage the best software tool for each pre-processing step, such as ANTs for normalization, FreeSurfer for surface reconstruction, and so on. In addition, users can easily access the workflows to determine how their data is pre-processed, thus providing better transparency and reproducibility.
对应缺点：
Limitations and reasons not to use fMRIPrep：
1.Very narrow FoV images oftentimes do not contain enough information for standard image registration methods to work correctly. Also, problems may arise when extracting the brain from these data. fMRIPrep supports pre-aligned BOLD series, and accepting pre-computed derivatives such as brain masks is a target of future effort.
2.fMRIPrep may also underperform for particular populations (e.g., infants) and non-human brains, although appropriate templates can be provided to overcome the issue.
3.The “EPInorm” approach is currently not supported, although we plan to implement this feature (see #620).
4.If you really want unlimited flexibility (which is obviously a double-edged sword).
5.If you want students to suffer through implementing each step for didactic purposes, or to learn shell-scripting or Python along the way.
6.If you are trying to reproduce some in-house lab pipeline.
(摘自fmriprep官网描述）

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二、环境要求

1.电脑版本是win10专业版，教育版之类也可以，家庭版不可以！（docker要求）
2.conda + python3.8（个人感觉3以上就可以吧）

三、docker安装和配置fmriprep

1.docker安装

参考链接：
b站详细fmriprep_tutorial，强烈推荐，本文大多参考该视频
菜鸟教程安装
另一个安装博客
注意1：刚安装好记得更新Linux内核（WSL2），按提示就行；安装完成要设置环境变量

一方面安装成功会看到对应电脑对应任务栏或者右下角隐藏栏也会出现小海豚，安装不成功就是红色小海豚。也可以命令行进行安装成功测试：

docker run --rm hello