splatter包安装总结

我之前试过，spllater包直接使用Biomanager来安装1.16.1版本的会出现问题

正确安装splatter1.8.0版本的方法如下：

remotes::install_github("Oshlack/splatter@RELEASE_3_9")

能正常安装
但是此时出现了一个问题就是
因此需要安装rsvd 包，安装的方法如下

install.packages("~/Downloads/rsvd_1.0.0.tar.gz", repos = NULL, type = "source")

记录一下我当前的R环境

> sessionInfo()
R version 3.6.3 (2020-02-29)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS Catalina 10.15.7

Matrix products: default
BLAS:   /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libRlapack.dylib

locale:
[1] zh_CN.UTF-8/zh_CN.UTF-8/zh_CN.UTF-8/C/zh_CN.UTF-8/zh_CN.UTF-8

attached base packages:
[1] parallel  stats4    stats     graphics  grDevices utils     datasets  methods  
[9] base     

other attached packages:
 [1] Seurat_2.3.0                Matrix_1.3-4                cowplot_1.1.1              
 [4] ggplot2_3.3.5               rsvd_1.0.0                  splatter_1.8.0             
 [7] SingleCellExperiment_1.8.0  SummarizedExperiment_1.16.1 DelayedArray_0.12.3        
[10] BiocParallel_1.20.1         matrixStats_0.61.0          Biobase_2.46.0             
[13] GenomicRanges_1.38.0        GenomeInfoDb_1.22.1         IRanges_2.20.2             
[16] S4Vectors_0.24.4            BiocGenerics_0.32.0        

loaded via a namespace (and not attached):
  [1] utf8_1.2.2             R.utils_2.10.1         tidyselect_1.1.1      
  [4] htmlwidgets_1.5.4      grid_3.6.3             ranger_0.13.1         
  [7] Rtsne_0.15             pROC_1.18.0            munsell_0.5.0         
 [10] codetools_0.2-18       mutoss_0.1-12          ica_1.0-2             
 [13] future_1.22.1          withr_2.4.2            colorspace_2.0-2      
 [16] knitr_1.34             rstudioapi_0.13        ROCR_1.0-11           
 [19] robustbase_0.93-8      dtw_1.22-3             listenv_0.8.0         
 [22] Rdpack_2.1.2           lars_1.2               GenomeInfoDbData_1.2.2
 [25] mnormt_2.0.2           rprojroot_2.0.2        parallelly_1.28.1     
 [28] vctrs_0.3.8            generics_0.1.0         TH.data_1.0-10        
 [31] ipred_0.9-12           xfun_0.26              diptest_0.76-0        
 [34] R6_2.5.1               VGAM_1.1-5             locfit_1.5-9.4        
 [37] flexmix_2.3-17         bitops_1.0-7           SDMTools_1.1-221.1    
 [40] scales_1.1.1           multcomp_1.4-17        nnet_7.3-16           
 [43] gtable_0.3.0           globals_0.14.0         processx_3.5.2        
 [46] sandwich_3.0-1         timeDate_3043.102      rlang_0.4.11          
 [49] scatterplot3d_0.3-41   splines_3.6.3          ModelMetrics_1.2.2.2  
 [52] checkmate_2.0.0        reshape2_1.4.4         backports_1.2.1       
 [55] Hmisc_4.5-0            caret_6.0-88           tools_3.6.3           
 [58] lava_1.6.10            ellipsis_0.3.2         gplots_3.1.1          
 [61] RColorBrewer_1.1-2     proxy_0.4-26           ggridges_0.5.3        
 [64] TFisher_0.2.0          Rcpp_1.0.7             plyr_1.8.6            
 [67] base64enc_0.1-3        zlibbioc_1.32.0        purrr_0.3.4           
 [70] RCurl_1.98-1.5         ps_1.6.0               prettyunits_1.1.1     
 [73] rpart_4.1-15           pbapply_1.5-0          zoo_1.8-9             
 [76] cluster_2.1.2          magrittr_2.0.1         data.table_1.14.0     
 [79] lmtest_0.9-38          RANN_2.6.1             tmvnsim_1.0-2         
 [82] mvtnorm_1.1-2          fitdistrplus_1.1-5     jpeg_0.1-9            
 [85] mclust_5.4.7           gridExtra_2.3          compiler_3.6.3        
 [88] tibble_3.1.4           KernSmooth_2.23-20     crayon_1.4.1          
 [91] R.oo_1.24.0            htmltools_0.5.2        segmented_1.3-4       
 [94] Formula_1.2-4          snow_0.4-3             tidyr_1.1.3           
 [97] tclust_1.4-2           lubridate_1.7.10       diffusionMap_1.2.0    
[100] MASS_7.3-54            fpc_2.2-9              cli_3.0.1             
[103] R.methodsS3_1.8.1      rbibutils_2.2.3        gdata_2.18.0          
[106] metap_1.5              gower_0.2.2            igraph_1.2.6          
[109] pkgconfig_2.0.3        sn_2.0.0               numDeriv_2016.8-1.1   
[112] foreign_0.8-75         recipes_0.1.16         foreach_1.5.1         
[115] multtest_2.6.0         XVector_0.26.0         prodlim_2019.11.13    
[118] stringr_1.4.0          callr_3.7.0            digest_0.6.28         
[121] tsne_0.1-3             htmlTable_2.2.1        curl_4.3.2            
[124] kernlab_0.9-29         gtools_3.9.2           modeltools_0.2-23     
[127] lifecycle_1.0.1        nlme_3.1-153           fansi_0.5.0           
[130] pillar_1.6.2           lattice_0.20-45        fastmap_1.1.0         
[133] plotrix_3.8-2          DEoptimR_1.0-9         pkgbuild_1.2.0        
[136] survival_3.2-13        glue_1.4.2             remotes_2.4.0         
[139] FNN_1.1.3              png_0.1-7              prabclus_2.3-2        
[142] iterators_1.0.13       class_7.3-19           stringi_1.7.4         
[145] mixtools_1.2.0         doSNOW_1.0.19          latticeExtra_0.6-29   
[148] caTools_1.18.2         mathjaxr_1.4-0         dplyr_1.0.7           
[151] irlba_2.3.3            future.apply_1.8.1     ape_5.5               

但是今天在ubuntu22.04上重新装该包时，发生了一个很奇怪的bug, 当我安装完splatter后
Error in FUN(X[[i]], …) : 找不到对象’simplify_NULL_dimnames’

解决办法：
卸载重新安装，当安装的时候，选择更新所有包，然后再重启，发现问题就没有了

安装splatter 1.8.0

首先下载splatter1.8.0.zip文件到本地

install.packages("/home/yxk/Desktop/Method_test/DCA/splatter-1.8.0/",type="source",repos=NULL)

然后提示要安装akima

install.packages("akima")

然后就可以正常生成模拟数据了