CIRCOS教程翻译 1.5——histogram

跟上篇几乎一样，主配置文件有变化，其他无变化：

karyotype = data/karyotype/karyotype.human.txt
chromosomes_units = 1000000

chromosomes_display_default = no
chromosomes                 = /hs[1234]$/

<colors>
chr1* = red
chr2* = orange
chr3* = green
chr4* = blue
</colors>

chromosomes_reverse = /hs[234]/
chromosomes_scale   = hs1=0.5r,/hs[234]/=0.5rn

<plots>

<plot>

type = histogram #设定plot类型
file = data/5/segdup.hs1234.hist.txt

r1   = 0.88r #限定直方图最高和最低位置
r0   = 0.81r. 

fill_color = vdgrey #直方图有fill和outline两种模式，其这种outline模式默认1px black，如果想关闭outline，令thickness = 0p

extend_bin = no #去掉直方图的底部的连接线

<rule> 
condition = on(hs1) #不显示1号染色体上的相关直方图数据
show      = no
</rule>

</plot>

<plot>
type = histogram
file = data/5/segdup.hs1234.stacked.txt
r1   = 0.99r
r0   = 0.92r

fill_color  = hs1,hs2,hs3,hs4 #由于该数据每行有4个值，那么将四个值分别填充染色体的颜色 

orientation = in #直方图方向朝向圆心

extend_bin  = no

</plot>

</plots>

<links>

<link>
file          = data/5/segdup.txt
radius        = 0.8r
bezier_radius = 0r
color         = black_a4
thickness     = 2

<rules>
<rule>
condition     = var(intrachr)
show          = no
</rule>
<rule>
condition     = 1
color         = eval(var(chr2))
flow          = continue
</rule>
<rule>
condition     = from(hs1)
radius1       = 0.99r
</rule>
<rule>
condition     = to(hs1)
radius2       = 0.99r
</rule>

</rules>

</link>

</links>

<<include ideogram.conf>>

<<include ticks.conf>>

<image>
<<include etc/image.conf>>                
</image>

<<include etc/colors_fonts_patterns.conf>> 

<<include etc/housekeeping.conf>>