2022.3.7科研记录

2022.3.7科研记录

1.T-LSTM
文章在这里：
Patient Subtyping via Time-Aware LSTM Networks
chrome-extension://ikhdkkncnoglghljlkmcimlnlhkeamad/pdf-viewer/web/viewer.html?file=http%3A%2F%2Fbiometrics.cse.msu.edu%2FPublications%2FMachineLearning%2FBaytasetal_PatientSubtypingViaTimeAwareLSTMNetworks.pdf
csdn里也有一个大佬写过对于LSTM的介绍：
T-LSTM模型

import torch
import torch.nn as nn


class TimeLSTM(nn.Module):
    def __init__(self, input_size, hidden_size, cuda_flag=False, bidirectional=False):
        # assumes that batch_first is always true
        super(TimeLSTM, self).__init__()
        self.hidden_size = hidden_size
        self.input_size = input_size
        self.cuda_flag = cuda_flag
        self.W_all = nn.Linear(hidden_size, hidden_size * 4)
        self.U_all = nn.Linear(input_size, hidden_size * 4)
        self.W_d = nn.Linear(hidden_size, hidden_size)
        self.bidirectional = bidirectional

    def forward(self, inputs, timestamps, lens, reverse=False):
        # inputs: [b, seq, embed]
        # h: [b, hid]
        # c: [b, hid]
        b, seq, embed = inputs.size()
        h = torch.zeros(b, self.hidden_size, requires_grad=False)
        c = torch.zeros(b, self.hidden_size, requires_grad=False)
        if self.cuda_flag:
            h = h.cuda()
            c = c.cuda()
        outputs = []
        for s in range(seq):
            c_s1 = torch.tanh(self.W_d(c))
            c_s2 = c_s1 * timestamps[:, s:s + 1].expand_as(c_s1)
            c_l = c - c_s1
            c_adj = c_l + c_s2
            outs = self.W_all(h) + self.U_all(inputs[:, s])
            f, i, o, c_tmp = torch.chunk(outs, 4, 1)
            f = torch.sigmoid(f)
            i = torch.sigmoid(i)
            o = torch.sigmoid(o)
            c_tmp = torch.sigmoid(c_tmp)
            c = f * c_adj + i * c_tmp
            h = o * torch.tanh(c)
            outputs.append(h)
        if reverse:
            outputs.reverse()
        outputs = torch.stack(outputs, 1)
        return outputs