1 target_gene_id <- unique(read.delim("miRNA-gene interactions.txt")$EntrezID) 2 # BiocInstaller::biocLite("clusterProfiler") 3 # BiocInstaller::biocLite("org.Hs.eg.db") 4 5 display_number = c(15, 10, 15) 6 ## GO enrichment with clusterProfiler 7 library(clusterProfiler) 8 ego_MF <- enrichGO(OrgDb="org.Hs.eg.db", 9 gene = target_gene_id, 10 pvalueCutoff = 0.05, 11 ont = "MF", 12 readable=TRUE) 13 ego_result_MF <- as.data.frame(ego_MF)[1:display_number[1], ] 14 # ego_result_MF <- ego_result_MF[order(ego_result_MF$Count),] 15 16 ego_CC <- enrichGO(OrgDb="org.Hs.eg.db
GO富集分析柱状图
最新推荐文章于 2023-03-04 01:02:07 发布