java8阻止gsea运行_确认过java 版本，GSEA遇上正确的运行环境

背景：Gene Set Enrichment Analysis (GSEA) is a computational method that determines whether an a priori defined set of genes shows statistically significant, concordant differences between two biological states 。(官网下载需填邮箱)

网址：http://software.broadinstitute.org/gsea/index.jsp

遇到问题: (集中在Java版本)1. GSEA运行需要Java； 2. 电脑自带Java,打不开GSEA

发现问题:GSEA支持java 版本(java 8)与电脑Java版本(java 11.0.1)不匹配。(在下载的时候有提示java版本，没看说明导致！！！)

解决问题：

1. ##查看电脑 java 版本

java -version

2.我选择用conda安装java 8

## 根据你自己的电脑来选择性安装conda

wget https://mirrors.tuna.tsinghua.edu.cn/anaconda/miniconda/Miniconda3-latest-Linux-x86_64.sh

# 然后修改镜像，加快下载速度

conda config --add channels https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/free

conda config --add channels https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge

conda config --add channels https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda

conda config --set show_channel_urls yes

##安装

sh Miniconda3-latest-Linux-x86_64.sh

## 把java8安装到指定环境，隔离开来

conda create -n qc

source activate qc

conda install openjdk=8.0.152

##版本成功，查看java版本

java -version

##运行：

java -jar gsea-3.0.jar

##很多broad institute出品的软件都依赖于 java8

## 想了解版本，

conda search openjdk

Loading channels: done

# Name                  Version          Build  Channel

openjdk                7.0.161  zulu7.21.0.3_0  anaconda/cloud/conda-forge

openjdk                8.0.112  zulu8.19.0.1_0  anaconda/cloud/conda-forge

openjdk                8.0.112  zulu8.19.0.1_1  anaconda/cloud/conda-forge

openjdk                8.0.112  zulu8.19.0.1_2  anaconda/cloud/conda-forge

openjdk                8.0.112  zulu8.19.0.1_3  anaconda/cloud/conda-forge

openjdk                8.0.121              0  pkgs/free

openjdk                8.0.121              1  pkgs/free

openjdk                8.0.121  zulu8.20.0.5_0  anaconda/cloud/conda-forge

openjdk                8.0.144  zulu8.23.0.3_0  anaconda/cloud/conda-forge

openjdk                8.0.144  zulu8.23.0.3_1  anaconda/cloud/conda-forge

openjdk                8.0.144  zulu8.23.0.3_2  anaconda/cloud/conda-forge

openjdk                8.0.152      h393ad39_1  pkgs/main

openjdk                8.0.152      he2ab291_0  pkgs/main

openjdk                8.0.192      h470a237_2  anaconda/cloud/conda-forge

openjdk                  9.0.7    h470a237_14  anaconda/cloud/conda-forge

openjdk                  9.0.7    h470a237_15  anaconda/cloud/conda-forge

openjdk                  9.0.7      h470a237_2  anaconda/cloud/conda-forge

openjdk                  9.0.7      h470a237_3  anaconda/cloud/conda-forge

openjdk                  9.0.7      h470a237_4  anaconda/cloud/conda-forge

openjdk                  9.0.7  zulu9.0.7.1_0  anaconda/cloud/conda-forge

openjdk                  10.0.2    h470a237_14  anaconda/cloud/conda-forge

openjdk                  10.0.2    h470a237_15  anaconda/cloud/conda-forge

openjdk                  10.0.2      h470a237_2  anaconda/cloud/conda-forge

openjdk                  10.0.2      h470a237_3  anaconda/cloud/conda-forge

openjdk                  10.0.2    zulu10.3+5_0  anaconda/cloud/conda-forge

openjdk                  11.0.1    h470a237_10  anaconda/cloud/conda-forge

openjdk                  11.0.1    h470a237_11  anaconda/cloud/conda-forge

openjdk                  11.0.1    h470a237_13  anaconda/cloud/conda-forge

openjdk                  11.0.1    h470a237_14  anaconda/cloud/conda-forge

openjdk                  11.0.1      h470a237_2  anaconda/cloud/conda-forge

openjdk                  11.0.1      h470a237_3  anaconda/cloud/conda-forge

openjdk                  11.0.1    zulu11.2.3_0  anaconda/cloud/conda-forge

感谢：Jimmy 以及生信技能树