盘点2024 | 已发表《中国药典》收载植物药材基原物种全基因组序列192种（2024年发表50种）-随笔04

2024年《中国药典》收载基原植物全基因组测序相关文章发表情况

1.苍术(苍术Atractylodes lancea)：Zhang C et al. Genome resequencing reveals the genetic basis of Population Evolution, local adaptation, and rewiring of the rhizomes metabolome in Atractylodes lancea. Hortic Res. 2024 Jun: uhae167. eCollection 2024 Jun.

2.芦根(芦苇Phragmites australis)：Christenhusz MJM et al. The genome sequence of common reed, Phragmites australis(Cav.) Steud. (Poaceae). Wellcome Open Res. 2024 Oct 11: 9: 577. eCollection 2024.

3.青皮、陈皮、橘红、橘核(柑橘Citrus reticulata)：Zhu C et al. The gap-free genome and multi-omics analysis of Citrus reticulata Chachi reveal the dynamics of fruit flavonoid biosynthesis. Hortic Res. 2024 Jun: uhae177. eCollection 2024 Jun.

4.枳壳(酸橙Citrus x aurantium)：Miao C et al. Haplotype-resolved chromosome-level genome assembly of Huyou (Citrus changshanensis). Sci Data. 2024 Jun 7, 11(1): 605.

5.郁金、姜黄(姜黄Curcuma longa)：Liao X et al. Inversions encounter relaxed genetic constraints and balance birth and death of TPS genes in Curcuma. Nat Commun. 2024 Oct 29, 15(1): 9349.

6.防风(防风Saposhnikovia divaricata)：Wang ZH et al. Genomic, transcriptomic, and metabolomic analyses provide insights into the evolution and development of a medicinal plant Saposhnikovia divaricata (Apiaceae). Hortic Res. 2024 Apr: uhae105. eCollection 2024 Apr.

7.葶苈子(独行菜Lepidium apetalum)：Yan H et al. A chromosome-level genome assembly and annotation of the medicinal plantLepidium apetalum. BMC Genom Data. 2024 Jun 17, 25(1): 61.

8.炮姜、生姜、干姜(姜Zingiber officinale)：Chen Z et al. A genome assembly of ginger (Zingiber officinaleRoscoe) provides insights into genome evolution and 6-gingerol biosynthesis. Plant J. 2024 Jan 22. Online ahead of print.

9.野菊花(野菊Chrysanthemum indicum)：Hou Z et al. The haplotype-resolved genome of diploid Chrysanthemum indicumunveils new acacetin synthases genes and their evolutionary history. Plant J. 2024 Jun 12. Online ahead of print.

10.罗布麻叶(罗布麻Apocynum venetum)：Dorjee T et al. Chromosome-scale genome analysis of Apocynum venetum sheds light on Apocynum phylogenetics, bast fiber development, and flavonoid synthesis. Ind Crops Prod. 2024 June, 212: 118325. Epub 2024 Mar 03.

11.三白草(三白草Saururus chinensis)：Luo L et al. The chromosome-level genomes of the herbal magnoliids Warburgia ugandensis and Saururus chinensis. Sci Data. 2024 May 30, 11(1): 554.

12.鱼腥草(蕺菜Houttuynia cordata)：Yang Z et al. The Houttuynia cordata genome provides insights into the regulatory mechanism of flavonoid biosynthesis in Yuxingcao. Plant Commun. 2024 Sep 2: 101075. Online ahead of print.

13.萹蓄(萹蓄Polygonum aviculare)：Christenhusz MJM et al. The genome sequence of common knotgrass, Polygonum aviculareL. (Polygonaceae). Wellcome Open Res. 2024 Mar 1: 9: 112. eCollection 2024.

14.钩藤(钩藤Uncaria rhynchophylla)：Hu T et al. Haploid-Phased Chromosomal Telomere-to-Telomere Genome Assembly of Medicinal Plant Uncaria rhynchophylla Dissects Genetic Controls on the Biosynthesis of Bioactive Alkaloids. Plant Cell Environ. 2024 Nov 7. Online ahead of print.

15.白扁豆(扁豆Lablab purpureus)：Pootakham W et al. A de novo chromosome-scale assembly of the Lablab purpureusgenome. Front Plant Sci. 2024 Mar 05: 15: 1347744 . eCollection 2024.

16.冬瓜皮(冬瓜Benincasa hispida)：Wang M et al. Chromosome-level genome assembly and population genomics reveals crucial selection for subgynoecy development in chieh-qua. Hortic Res. 2024 Apr: uhae113. eCollection 2024 Apr.

17.冬凌草(碎米桠Isodon rubescens)：Yang H et al. High-quality assembly of the T2T genome for Isodon rubescens f.lushanensis reveals genomic structure variations between 2 typical forms of Isodon rubescens. Gigascience. 2024 Jan 2: 13: giae075.

18.玫瑰花(玫瑰Rosa rugosa)：Liu D et al. Telomere-to-telomere, gap-free assembly of the Rosa rugosareference genome. Hortic Plant J. 2024 (10), Epub ahead of publication

19.蛇床子(蛇床Cnidium monnieri)：Wang Z et al. Chromosome-level genome assembly of Cnidium monnieri, a highly demanded traditional Chinese medicine. Sci Data. 2024 Jun 22, 11(1): 667.

20.红花(红花Carthamus tinctorius)：Dong Y et al. The Carthamus tinctorius L. genome sequence provides insights into synthesis of unsaturated fatty acids. BMC Genomics. 2024 May 23, 25(1): 510.

21.大皂角(皂荚Gleditsia sinensis)：Chen R et al. The genomes of seven economic Caesalpinioideae trees provide insights into polyploidization history and secondary metabolite biosynthesis. Plant Commun. 2024 May 9: 100944. Online ahead of print.

22.木棉花(木棉Bombax ceiba)：Shao L et al. High-quality genomes of Bombax ceiba and Ceiba pentandraprovide insights into evolution of Malvaceae species and differentiation of natural fiber. Plant Commun. 2024 Feb 5:100832. Online ahead of print.

23.月季花(月季花Rosa chinensis)：Cheng B et al. Compiling molecular evidence from a tetraploid rose genome into a near-saturated map for the identification of pigment-related genes. Hortic Plant J. 2024 (10), Epub ahead of publication

24.艾叶(艾Artemisia argyi)：Gao X et al. The reference genome sequence of Artemisia argyi provides insights into secondary metabolism biosynthesis. Front Plant Sci. 2024 Jun 28, 15: 1406592. eCollection 2024.

25.石斛(石斛Dendrobium nobile)：Li D et al. A high-quality chromosomal-level reference genome of Dendrobium nobile Lindl. provides new insights into the biosynthesis and accumulation of picrotoxane-type sesquiterpenoid alkaloids. Ind Crops Prod. 2024 May, 211: 118243. Epub 2024 Feb 22.

26.枸杞子、地骨皮(宁夏枸杞Lycium barbarum)：Zhao J et al. Metabolite-based genome-wide association studies enable the dissection of the genetic bases of flavonoids, betaine and spermidine in wolfberry (Lycium). Plant Biotechnol J. 2024 Jan 9. Online ahead of print.

27.合欢花、合欢皮(合欢Albizia julibrissin)：Chen R et al. The genomes of seven economic Caesalpinioideae trees provide insights into polyploidization history and secondary metabolite biosynthesis. Plant Commun. 2024 May 9: 100944. Online ahead of print.

28.猪牙皂、皂角刺(山皂荚Gleditsia sinensis)：Chen R et al. The genomes of seven economic Caesalpinioideae trees provide insights into polyploidization history and secondary metabolite biosynthesis. Plant Commun. 2024 May 9: 100944. Online ahead of print.

29.秦皮(白蜡树Fraxinus chinensis)：Liu JN et al. Pan-genome analyses of eleven Fraxinus species provide insights into salt adaptation in ash trees. Plant Commun. 2024 Sep 21: 101137. Online ahead of print.

30.桃仁(山桃Prunus davidiana)：Wang JX et al. Haplotype-resolved genome of a heterozygous wild peach reveals the PdaWRKY4-PdaCYP716A1 module mediates resistance to aphids by regulating betulin biosynthesis. J Integr Plant Biol. 2024 Oct 25. Online ahead of print.

31.党参(党参Codonopsis pilosula)：Chen BZ et al. Chromosome-scale genome assembly of Codonopsis pilosula and comparative genomic analyses shed light on its genome evolution. Front Plant Sci. 2024 Nov 05, 15: 1469375 eCollection 2024.

32.商陆(垂序商陆Phytolacca americana)：Dougherty K et al. Improved pokeweed genome assembly and early gene expression changes in response to jasmonic acid. BMC Plant Biol. 2024 Aug 24, 24(1): 801.

33.筋骨草(金疮小草Ajuga decumbens)：Gao Y et al. Chromosome-level genome assembly of Ajuga decumbens. Front Plant Sci. 2024 Jun 19: 15: 1413468. eCollection 2024.

34.刀豆(刀豆Canavalia gladiata)：Yuan L et al. The genomes of 5 underutilized Papilionoideae crops provide insights into root nodulation and disease resistance. Gigascience. 2024: 13: giae063.

35.黄芪、炙黄芪(黄芪Astragalus membranaceus var. mongholicus)：Fan H et al. Chromosome-scale genome assembly of Astragalus membranaceus using PacBio and Hi-C technologies. Sci Data. 2024 Oct 2, 11(1): 1071.

36.黄连(云南黄连Coptis teeta)：Wang Y et al. A haplotype-resolved genome assembly of Coptis teeta, an endangered plant of significant medicinal value. Sci Data. 2024 Sep 18, 11(1): 1012.

37.水飞蓟(水飞蓟Silybum marianum)：Kim KD et al. Chromosome-level genome assembly of milk thistle (Silybum marianum(L.) Gaertn.). Sci Data 11, 342 (2024).

38.余甘子(余甘子Phyllanthus emblica)：Li F et al. Haplotype-resolved genomes of octoploid species in Phyllanthaceae family reveal a critical role for polyploidization and hybridization in speciation. Plant J. 2024 Apr 12. Online ahead of print.

39.连翘(连翘Forsythia suspensa)：Cui J et al. The gap-free genome of Forsythia suspensa illuminates the intricate landscape of centromeres. Hortic Res. 2024 Jul: uhae185. eCollection 2024 Jul.

40.茺蔚子、益母草(益母草Leonurus japonicus)：Wang X et al. De novo chromosome-level genome assembly of Chinese motherwort (Leonurus japonicus). Sci Data. 2024 Jan 9, 11(1): 55.

41.秦艽(麻花艽Gentiana straminea)：Ala KG et al. Insights from the first chromosome-level genome assembly of the alpine gentian Gentiana straminea Maxim. (Insight from genome assembly of Gentiana straminea). DNA Res. 2024 Jul 17: dsae022. Online ahead of print.

42.夏枯草(夏枯草Prunella vulgaris)：Zhang S et al. Chromosome-level genome assembly of Prunella vulgaris L. provides insights into pentacyclic triterpenoid biosynthesis. Plant J. 2024 Jan 16. Online ahead of print.

43.大黄(掌叶大黄Rheum palmatum)：Zhang T et al. A chromosome-level genome reveals genome evolution and molecular basis of anthraquinone biosynthesis in Rheum palmatum. BMC Plant Biol. 2024 Apr 10, 24(1): 261.

44.沙棘(沙棘Hippophae rhamnoides)：Yang X et al. Chromosome-level genome assembly of Hippophae rhamnoidesvariety. Sci Data. 2024 Jul 13, 11(1): 776.

45.北豆根(蝙蝠葛Menispermum dauricum)：An Z et al. Lineage-Specific CYP80 Expansion and Benzylisoquinoline Alkaloid Diversity in Early-Diverging Eudicots. Adv Sci (Weinh). 2024 Mar 13: e2309990. Online ahead of print.

46.龙脷叶(龙脷叶Breynia spatulifolia)：Li F et al. Haplotype-resolved genomes of octoploid species in Phyllanthaceae family reveal a critical role for polyploidization and hybridization in speciation. Plant J. 2024 Apr 12. Online ahead of print.

47.闹羊花(羊踯躅Rhododendron molle)：Xia XM et al. Genomic insights into adaptive evolution of the species-rich cosmopolitan plant genus Rhododendron. Cell Rep. 2024 Sep 18, 43(10): 114745. Online ahead of print.

48.贯叶金丝桃(贯叶连翘Hypericum perforatum)：Wu S et al. Single cell RNA sequencing facilitates the elucidation of the complete biosynthesis of the antidepressant hyperforin in St. Johns wort. Mol Plant. 2024 Aug 12: S1674-2052(24)00258-2. Online ahead of print.

49.延胡索(延胡索Corydalis yanhusuo)：Xu D et al. Haplotype-resolved genome assembly of Corydalis yanhusuo, a traditional Chinese medicine with unusual telomere motif. Hortic Res. 2024 Jan 02: uhad296.

50.金果榄(青牛胆Paratinospora sagittata)：Alami MM et al. Chromosome-scale genome assembly of medicinal plant Tinospora sagittata (Oliv.) Gagnep. from the Menispermaceae family. Sci Data. 11, 610 (2024).
参考

https://mp.weixin.qq.com/s/MXIIKP2bQbA2Wrogn3z7-g     #分子生药创新团队