conda 安装bcftools: error while loading shared libraries: libgsl.so.25 问题

1. 通过conda安装bcftools后运行报libgsl.so.25问题

2. 查看libgsl动态链接库

$ ldconfig -p | grep libgsl
    libgslcblas.so.0 (libc6,x86-64) => /lib/x86_64-linux-gnu/libgslcblas.so.0
    libgslcblas.so (libc6,x86-64) => /lib/x86_64-linux-gnu/libgslcblas.so
    libgsl.so.23 (libc6,x86-64) => /lib/x86_64-linux-gnu/libgsl.so.23
    libgsl.so (libc6,x86-64) => /lib/x86_64-linux-gnu/libgsl.so

3. 解决方法,可以直接创建软链接使得libgsl.so.25链接到已有的/lib/x86_64-linux-gnu/libgsl.so.23

ln -s /lib/x86_64-linux-gnu/libgsl.so.23 ~/miniconda3/lib/libgsl.so.25

4. 运行bcftools --version确认问题是否解决

bcftools 1.17
Using htslib 1.17
Copyright (C) 2023 Genome Research Ltd.
License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law.

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引用\[1\]:当使用conda环境直接安装samtools时,可能会出现以下错误提示:samtools: error while loading shared libraries: libcrypto.so.1.0.0: cannot open shared object file: No such file or directory 或者samtools: error while loading shared libraries: libncurses.so.5: cannot open shared object file: No such file or directory。引用\[2\]和引用\[3\]提供了解决这个问题的方法。解决办法是在终端中执行以下命令:cd usr/anaconda3/lib(其中usr为你的用户名)然后执行ll命令查看libcrypto.so文件的软链接,然后创建一个指向libcrypto.so.1.1的软链接命名为libcrypto.so.1.0.0。这样就可以解决samtools加载共享库文件的问题。 #### 引用[.reference_title] - *1* [解决samtools: error while loading shared libraries: libcrypto.so.1.0.0/libncurses.so.5的问题](https://blog.csdn.net/zhangjunya/article/details/108235796)[target="_blank" data-report-click={"spm":"1018.2226.3001.9630","extra":{"utm_source":"vip_chatgpt_common_search_pc_result","utm_medium":"distribute.pc_search_result.none-task-cask-2~all~insert_cask~default-1-null.142^v91^insert_down1,239^v3^insert_chatgpt"}} ] [.reference_item] - *2* [[Bug]samtools提示error while loading shared libraries: libcrypto.so.1.0.0](https://blog.csdn.net/S_AGZX/article/details/123642937)[target="_blank" data-report-click={"spm":"1018.2226.3001.9630","extra":{"utm_source":"vip_chatgpt_common_search_pc_result","utm_medium":"distribute.pc_search_result.none-task-cask-2~all~insert_cask~default-1-null.142^v91^insert_down1,239^v3^insert_chatgpt"}} ] [.reference_item] - *3* [samtools: error while loading shared libraries: libcrypto.so.1.0.0: cannot open shared .........](https://blog.csdn.net/weixin_43960055/article/details/114992790)[target="_blank" data-report-click={"spm":"1018.2226.3001.9630","extra":{"utm_source":"vip_chatgpt_common_search_pc_result","utm_medium":"distribute.pc_search_result.none-task-cask-2~all~insert_cask~default-1-null.142^v91^insert_down1,239^v3^insert_chatgpt"}} ] [.reference_item] [ .reference_list ]
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