不存在叫‘GO.db’这个名字的程辑包

library(WGCNA)
载入需要的程辑包：dynamicTreeCut
载入需要的程辑包：fastcluster

载入程辑包：‘fastcluster’

The following object is masked from ‘package:stats’:

    hclust

Error: package or namespace load failed for ‘WGCNA’ in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]):
 不存在叫‘GO.db’这个名字的程辑包
library(GenomeInfoDbData)
library('Rcpp')

if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("WGCNA")
library(WGCNA)
Error: package or namespace load failed for ‘WGCNA’ in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]):
 不存在叫‘GO.db’这个名字的程辑包
BiocManager::install("GO.db")
'getOption("repos")' replaces Bioconductor standard repositories, see 'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    CRAN: https://cran.rstudio.com/
Bioconductor version 3.16 (BiocManager 1.30.23), R 4.2.3 (2023-03-15 ucrt)
Installing package(s) 'GO.db'
安装源码包‘GO.db’

trying URL 'https://bioconductor.org/packages/3.16/data/annotation/src/contrib/GO.db_3.16.0.tar.gz'
Content type 'application/gzip' length 29540685 bytes (28.2 MB)
downloaded 2.3 MB

Error in download.file(url, destfile, method, mode = "wb", ...) : 
  download from 'https://bioconductor.org/packages/3.16/data/annotation/src/contrib/GO.db_3.16.0.tar.gz' failed
In addition: Warning messages:
1: In download.file(url, destfile, method, mode = "wb", ...) :
  downloaded length 2424832 != reported length 29540685
2: In download.file(url, destfile, method, mode = "wb", ...) :
  URL 'https://mghp.osn.xsede.org/bir190004-bucket01/archive.bioconductor.org/packages/3.16/data/annotation/src/contrib/GO.db_3.16.0.tar.gz': Timeout of 300 seconds was reached
Warning in download.packages(pkgs, destdir = tmpd, available = available,  :
  下载程序包‘GO.db’时出了问题
Old packages: 'broom', 'cachem', 'data.table', 'fastmap', 'openssl', 'ragg', 'rmarkdown', 'stringi', 'vegan', 'cluster', 'foreign', 'KernSmooth',
  'lattice', 'mgcv', 'nlme', 'nnet', 'rpart', 'survival'
Update all/some/none? [a/s/n]: 

解决方法：

复制报错信息中：https://bioconductor.org/packages/3.16/data/annotation/src/contrib/GO.db_3.16.0.tar.gz

下载到本地

Tools→install.packages→Browse→选择下载的文件→install即可

验证：

library("GO.db")