EMBOSS的安装以及使用

最新推荐文章于 2024-07-24 16:34:07 发布

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最新推荐文章于 2024-07-24 16:34:07 发布

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分类专栏：生物信息分析

本文链接：https://blog.csdn.net/Cassiel60/article/details/88218706

版权

本文详细介绍了EMBOSS的安装过程，包括从源码安装、配置、编译到测试。同时，文章还讲解了EMBOSS的常用工具如序列比对、引物设计，并提到了在使用eprimer3时遇到的问题及其解决方法，以及如何进行模拟PCR和序列比对。

摘要由CSDN通过智能技术生成

EMBOSS 是欧洲分子生物学开放软件包，主要做序列比对，数据库搜搜，蛋白模块分析和功能域分析，序列模式搜索，
引物设计等。

一些常见的应用。具体使用及功能可以参照http://emboss.sourceforge.net/apps/

或者在/EMBOSS-6.6.0/emboss路径下,输入./prophet --h 查看（仅仅输入prophet --h 会提示The program 'prophet' is currently not installed. To run 'prophet' please ask your administrator to install the package 'emboss' ）
prophet Gapped alignment for profiles.
infoseq Displays some simple information about sequences.
water Smith-Waterman local alignment.
pepstats Protein statistics.
showfeat Show features of a sequence.
palindrome Looks for inverted repeats in a nucleotide sequence.
eprimer3 Picks PCR primers and hybridization oligos.
profit Scan a sequence or database with a matrix or profile.
extractseq Extract regions from a sequence.
marscan Finds MAR/SAR sites in nucleic sequences.
tfscan Scans DNA sequences for transcription factors.
patmatmotifs Compares a protein sequence to the PROSITE motif database.
showdb Displays information on the currently available databases.
wossname Finds programs by keywords in their one-line documentation.
abiview Reads ABI file and display the trace.
tranalign Align nucleic coding regions