EMBOSS 是欧洲分子生物学开放软件包,主要做序列比对,数据库搜搜,蛋白模块 分析和功能域分析,序列模式搜索,
引物设计等。
一些常见的应用。具体使用及功能可以参照http://emboss.sourceforge.net/apps/
或者在/EMBOSS-6.6.0/emboss路径下,输入./prophet --h 查看(仅仅输入prophet --h 会提示The program 'prophet' is currently not installed. To run 'prophet' please ask your administrator to install the package 'emboss' )
prophet Gapped alignment for profiles.
infoseq Displays some simple information about sequences.
water Smith-Waterman local alignment.
pepstats Protein statistics.
showfeat Show features of a sequence.
palindrome Looks for inverted repeats in a nucleotide sequence.
eprimer3 Picks PCR primers and hybridization oligos.
profit Scan a sequence or database with a matrix or profile.
extractseq Extract regions from a sequence.
marscan Finds MAR/SAR sites in nucleic sequences.
tfscan Scans DNA sequences for transcription factors.
patmatmotifs Compares a protein sequence to the PROSITE motif database.
showdb Displays information on the currently available databases.
wossname Finds programs by keywords in their one-line documentation.
abiview Reads ABI file and display the trace.
tranalign Align nucleic coding regions