CIRCOS教程翻译 1.2——ticks

karyotype = data/karyotype/karyotype.human.txt

chromosomes_units = 1000000 #默认染色体长度单位为MB

<<include ideogram.conf>>
<<include ticks.conf>> #类似java类函数的调用

<image>
<<include etc/image.conf>>                
</image>

<<include etc/colors_fonts_patterns.conf>> 

<<include etc/housekeeping.conf>>

以上为主文件，现在看看调用里面是什么吧：

show_ticks          = yes #刻度尺
show_tick_labels    = yes

<ticks>
radius           = 1r
color            = black
thickness        = 2p

multiplier       = 1e-6

format           = %d #格式化，d代表integer

<tick>
spacing        = 5u #u为circos绝对单位，次刻度
size           = 10p
</tick>

<tick>
spacing        = 25u #主刻度
size           = 15p
show_label     = yes
label_size     = 20p
label_offset   = 10
format         = %d
</tick>

</ticks>

以上为刻度的画法，现在要添加染色体的名称：

<ideogram>

<spacing>
default = 0.005r
</spacing>

radius           = 0.90r
thickness        = 20p
fill             = yes
stroke_color     = dgrey
stroke_thickness = 2p

show_label       = yes
label_font       = default 
label_radius     = dims(image,radius) - 60p #计算image中radius的尺度
label_size       = 30p
label_parallel   = yes #label垂直于圈

</ideogram>

三个文件需分别保存即可运行：