pheatmap 参数详解

最新推荐文章于 2024-08-07 16:07:24 发布

菠萝西斯

最新推荐文章于 2024-08-07 16:07:24 发布

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分类专栏：学习笔记文章标签： big data r语言

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本文链接：https://blog.csdn.net/u013429737/article/details/123847564

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本文详细解析R语言中的pheatmap函数，通过示例介绍如何创建和定制具有行与列注释的热图，适用于大数据可视化需求。

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前言

A function to draw clustered heatmaps where one has better control over some graphical parameters such as cell size, etc.
pheatmap 这个包可以认为是heatmap的加强版，基本可以一包走天下了。

一、参数解析

Usage
pheatmap(mat, color = colorRampPalette(rev(brewer.pal(n = 7, name =
  "RdYlBu")))(100), kmeans_k = NA, breaks = NA, border_color = "grey60",
  cellwidth = NA, cellheight = NA, scale = "none", cluster_rows = TRUE,
  cluster_cols = TRUE, clustering_distance_rows = "euclidean",
  clustering_distance_cols = "euclidean", clustering_method = "complete",
  clustering_callback = identity2, cutree_rows = NA, cutree_cols = NA,
  treeheight_row = ifelse((class(cluster_rows) == "hclust") || cluster_rows,
  50, 0), treeheight_col = ifelse((class(cluster_cols) == "hclust") ||
  cluster_cols, 50, 0), legend = TRUE, legend_breaks = NA,
  legend_labels = NA, annotation_row = NA, annotation_col = NA,
  annotation = NA, annotation_colors = NA, annotation_legend = TRUE,
  annotation_names_row = TRUE, annotation_names_col = TRUE,
  drop_levels = TRUE, show_rownames = T, show_colnames = T, main = NA,
  fontsize = 10, fontsize_row = fontsize, fontsize_col = fontsize,
  angle_col = c("270", "0", "45", "90", "315"), display_numbers = F,
  number_format = "%.2f", number_color = "grey30", fontsize_number = 0.8