研究论文 20231123-Genome Biology：零样本学习预测细基因表达顺式调控模式

Li, Yongge, et al. "CREaTor: zero-shot cis-regulatory pattern modeling with attention mechanisms." Genome Biology 24.1 (2023): 266.

2023年11月23日见刊

微信分享：Genome Biology | CREaTor: 零样本学习预测细胞类型特异的基因表达顺式调控模式

待解决问题：顺式-调控序列与靶基因连接   Linking cis-regulatory sequences to target genes 

一、数据集：

RNA expression, DNase-seq, and ChIP-seq files were downloaded from ENCODE (ENCODE, by October 2021). 

细胞类型：human tissues, primary cells, cell lines, and in vitro differentiated cells (1) with RNA-seq, DNase, CTCF ChIP-seq, H3K4me3 ChIP-seq, and H3K27ac ChIP-seq data available on ENCODE and (2) with complete cCRE information on SCREEN Registry V3.

二、CRE