最近将r升级到4.3.0,使用biomanager安装enomicFeatures包时出现无法访问index的问题
BiocManager::install("GenomicFeatures")
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
CRAN: https://mirror.lzu.edu.cn/CRAN/
Bioconductor version 3.17 (BiocManager 1.30.20), R 4.3.0 (2023-04-21)
....
Warning: unable to access index for repository https://bioconductor.org/packages/3.17/data/experiment/bin/macosx/big-sur-x86_64/contrib/4.3:
cannot open URL 'https://bioconductor.org/packages/3.17/data/experiment/bin/macosx/big-sur-x86_64/contrib/4.3/PACKAGES'
Warning: unable to access index for repository https://bioconductor.org/packages/3.17/workflows/bin/macosx/big-sur-x86_64/contrib/4.3:
cannot open URL 'https://bioconductor.org/packages/3.17/workflows/bin/macosx/big-sur-x86_64/contrib/4.3/PACKAGES'
查询一圈,是bioconducter 没有big-sur的二进制编译版本。需要从source下载,加上type=“source”可以解决
BiocManager::install("GenomicFeatures",type = "source")
大部分可以安装成果