TCGA_筛选病人_radiation

一、读入数据

cl_full <-read.csv(file = "Data&Results/临床数据下载/clinical_with_os_dcf_全面数据.csv", header=T, row.names=1, check.names=FALSE) 

colnames(cl_full)[grepl("radiation", colnames(cl_full))]

"radiation_therapy"                              

"has_radiations_information"                      

"additional_radiation_therapy"                   
"treatments_radiation_treatment_intent_type"      

"treatments_radiation_treatment_id"              

"treatments_radiation_treatment_type"            

"treatments_radiation_therapeutic_agents"         "treatments_radiation_treatment_or_therapy"       "treatments_radiation_days_to_treatment_end"     
"treatments_radiation_days_to_treatment_start"    "treatments_radiation_regimen_or_line_of_therapy" "treatments_radiation_treatment_effect"          
"treatments_radiation_initial_disease_status"     "treatments_radiation_treatment_anatomic_site"    "treatments_radiation_treatment_outcome"     

cl_full的列名中，包含radiation的共有15个，其中有两个列表明是否接受过放射治疗。但是二者的信息并不相同，有帖子解释为：

radiation_therapy是最初接受放疗的信息，243个NO，39个YES

treatments_radiation_treatment_or_therapy是随访后接受放疗的信息（更新数据），321个NO，86个YES

因此实际筛选时以treatments_radiation_treatment_or_therapy为主

二、处理数据

cl_full = cl_full[cl_full$treatments_radiation_treatment_or_therapy=='yes',]

 共筛选到86个接受过放射的病人