1.下载:
git clone https://github.com/arq5x/bedtools.git
2.编译:
make
3.配置:
cp * /usr/local/bin/
4.运行:
bam变成bed
hadoop@Master:~/xubo/data/snap$ bamToBed -i datatest.sorted.bam >datatest.sorted.bed
查看:
hadoop@Master:~/xubo/data/snap$ cat datatest.sorted.bed
ref1 0 101 read1 37 +
ref1 101 202 read1 37 +
5.记录: