5.25 Freesurfer入门学习pre-processing

2022.5.25 Freesurfer入门学习pre-processing

参考资料：https://andysbrainbook.readthedocs.io/en/latest/FreeSurfer/FreeSurfer_Introduction.html

FreeSurfer Tutorial #2:

pre-processing

export FREESURFER_HOME=/Applications/freesurfer/7.2.0
export SUBJECTS_DIR=$FREESURFER_HOME/subjects
source $FREESURFER_HOME/SetUpFreeSurfer.sh

which freeview
freeview /Applications/freesurfer/7.2.0/subjects/bert/mri/brain.mgz

the output here should be:

Example 1

mri_convert sample-001.mgz sample-001.nii.gz 
reading from sample-001.mgz...
TR=7.25, TE=3.22, TI=600.00, flip angle=7.00
i_ras = (-0, -1, -0)
j_ras = (-0, 0, -1)
k_ras = (-1, 0, 0)
writing to sample-001.nii.gz...

The first example here work well.