【ADNI】数据预处理（6）ADNI_slice_dataloader ||| show image

最新推荐文章于 2024-04-08 13:44:38 发布

Houchaoqun_XMU

最新推荐文章于 2024-04-08 13:44:38 发布

阅读量1.9k

点赞数 1

分类专栏：【医疗图像处理】【深度学习】文章标签： ADNI dataloader slice plt

本文链接：https://blog.csdn.net/Houchaoqun_XMU/article/details/80426386

版权

ADNI Series

1、【ADNI】数据预处理（1）SPM，CAT12

2、【ADNI】数据预处理（2）获取 subject slices

3、【ADNI】数据预处理（3）CNNs

4、【ADNI】数据预处理（4）Get top k slices according to CNNs

5、【ADNI】数据预处理（5）Get top k slices (pMCI_sMCI) according to CNNs

6、【ADNI】数据预处理（6）ADNI_slice_dataloader ||| show image

本文总结的功能：

1）将来自同一个 subject MRI image 的 slice concatenate 到同一数组；

2）显示 slices image；

subject ID and relevant label：存储与 .txt 文本中，如下所示

141_S_1137 1
141_S_1152 1
002_S_0295 0
002_S_0559 0

subject id ||| slice path ||| label name：

141_S_0696|||/home/hcq/alzheimer_disease/ADNI_825/experiments_FineTunning/majority_select_top51_slices_folder_02_AD_NC/validation/AD/141_S_0696_slice_Y74.jpg|||AD
141_S_0696|||/home/hcq/alzheimer_disease/ADNI_825/experiments_FineTunning/majority_select_top51_slices_folder_02_AD_NC/validation/AD/141_S_0696_slice_Z46.jpg|||AD
002_S_0413|||/home/hcq/alzheimer_disease/ADNI_825/experiments_FineTunning/majority_select_top51_slices_folder_02_AD_NC/validation/NC/002_S_0413_slice_X46.jpg|||NC
002_S_0413|||/home/hcq/alzheimer_disease/ADNI_825/experiments_FineTunning/majority_select_top51_slices_folder_02_AD_NC/validation/NC/002_S_0413_slice_X50.jpg|||NC

效果：

1）subject：image = [batch_size, slice_num, img_w, img_h]

2）label：AD or NC

源码：

import random
import os
import numpy as np
import matplotlib.image as mpimg
import matplotlib.pyplot as plt  
import cv2


def read_lists(file_path):
    dataset_list = np.loadt