R语言绘制热图——pheatmap

（网易云课堂，腾讯课堂生物信息讲师，高级生物信息工程师）

pheatmap简介: Pretty Heatmaps——Implementation of heatmaps that offers more control over dimensions and appearance.

library(pheatmap)
#创建数据集test测试矩阵
test = matrix(rnorm(200), 20, 10)
test[1:10, seq(1, 10, 2)] = test[1:10, seq(1, 10, 2)] + 3
test[11:20, seq(2, 10, 2)] = test[11:20, seq(2, 10, 2)] + 2
test[15:20, seq(2, 10, 2)] = test[15:20, seq(2, 10, 2)] + 4
colnames(test) = paste("Test", 1:10, sep = "")
rownames(test) = paste("Gene", 1:20, sep = "")
# 用pheatmap函数画热图
pheatmap(test)

#默认参数下是对行列均进行聚类（可设置cluster_row = FALSE, cluster_col = FALSE不进行行列的聚类；如果进行聚类了，还可以通过设置treeheight_row=0, treeheight_col=0不显示dendrogram），矩阵没有进行标准化（标准化参数为scale，可选"none", "row",