转录组入门(1)：安装软件

HISAT

wget ftp:// ftp.ccb.jhu.edu/pub/infphilo/hisat2/downloads/hisat2-2.1.0-source.zip
unzip hisat2-2.1.0-source.zip
cd hisat2-2.1.0
make  # 在此之前要安装g++和gcc，用sudo apt install 安装
rm -f *.h *.cpp

samtools

wget  https://github.com/samtools/samtools/releases/download/1.5/samtools-1.5.tar.bz2
tar xvfj samtools-1.5.tar.bz2
cd samtools-1.5
./configure  # 根据configure检测，安装系统依赖的模块，直到没有报错
make 
sudo make install 

HTSeq

# 安装依赖
sudo apt-get install python-pip
pip install --upgrade pip
sudo apt-get install build-essential python2.7-dev python-numpy python-matplotlib python-pysam python-htseq
pip install HTSeq

转载于:https://www.cnblogs.com/freescience/p/7277567.html