bioconductor包的安装

bioconductor 包的安装

安装R,并启动R。
> source("http://bioconductor.org/biocLite.R")
> biocLite()
Using R version 2.10.0 (R-devel), biocinstall version 2.5.5.
Installing Bioconductor version 2.5 packages:
[1] "affy"         "affydata"     "affyPLM"      "annaffy"    
[5] "annotate"     "Biobase"      "biomaRt"      "Biostrings" 
[9] "DynDoc"       "gcrma"        "genefilter"   "geneplotter"
[13] "hgu95av2.db"  "limma"        "marray"       "multtest"   
[17] "vsn"          "xtable"       "affyQCReport"
Please wait...

also installing the dependencies ‘DBI’, ‘RSQLite’, ‘bitops’, ‘affyio’, ‘preprocessCore’, ‘GO.db’, ‘KEGG.db’, ‘AnnotationDbi’, ‘XML’, ‘RCurl’, ‘IRanges’, ‘RColorBrewer’, ‘org.Hs.eg.db’, ‘simpleaffy’

试开URL’http://cran.fhcrc.org/bin/windows/contrib/2.10/DBI_0.2-4.zip'
Content type 'application/zip' length 375508 bytes (366 Kb)
打开了URL
downloaded 366 Kb

试开URL’http://cran.fhcrc.org/bin/windows/contrib/2.10/RSQLite_0.7-3.zip'
Content type 'application/zip' length 544274 bytes (531 Kb)
打开了URL
downloaded 531 Kb

试开URL’http://cran.fhcrc.org/bin/windows/contrib/2.10/bitops_1.0-4.1.zip'
Content type 'application/zip' length 17325 bytes (16 Kb)
打开了URL
downloaded 16 Kb

试开URL’http://bioconductor.org/packages/2.5/bioc/bin/windows/contrib/2.10/affyio_1.13.5.zip'
Content type 'application/zip' length 82858 bytes (80 Kb)
打开了URL
downloaded 80 Kb

试开URL’http://bioconductor.org/packages/2.5/bioc/bin/windows/contrib/2.10/preprocessCore_1.7.9.zip'
Content type 'application/zip' length 118603 bytes (115 Kb)
打开了URL
downloaded 115 Kb

试开URL’http://bioconductor.org/packages/2.5/data/annotation/bin/windows/contrib/2.10/GO.db_2.3.5.zip'
Content type 'application/zip' length 15170627 bytes (14.5 Mb)
打开了URL
downloaded 14.5 Mb

试开URL’http://bioconductor.org/packages/2.5/data/annotation/bin/windows/contrib/2.10/KEGG.db_2.3.5.zip'
Content type 'application/zip' length 1608188 bytes (1.5 Mb)
打开了URL
downloaded 1.5 Mb

试开URL’http://bioconductor.org/packages/2.5/bioc/bin/windows/contrib/2.10/AnnotationDbi_1.7.20.zip'
Content type 'application/zip' length 5035348 bytes (4.8 Mb)
打开了URL
downloaded 4.8 Mb

试开URL’http://bioconductor.org/packages/2.5/extra/bin/windows/contrib/2.10/XML_2.6-0.zip'
Content type 'application/zip' length 2229321 bytes (2.1 Mb)
打开了URL
downloaded 2.1 Mb

试开URL’http://bioconductor.org/packages/2.5/extra/bin/windows/contrib/2.10/RCurl_1.2-1.zip'
Content type 'application/zip' length 1789923 bytes (1.7 Mb)
打开了URL
downloaded 1.7 Mb

试开URL’http://bioconductor.org/packages/2.5/bioc/bin/windows/contrib/2.10/IRanges_1.3.99.zip'
Content type 'application/zip' length 1521672 bytes (1.5 Mb)
打开了URL
downloaded 1.5 Mb

试开URL’http://cran.fhcrc.org/bin/windows/contrib/2.10/RColorBrewer_1.0-2.zip'
Content type 'application/zip' length 23811 bytes (23 Kb)
打开了URL
downloaded 23 Kb

试开URL’http://bioconductor.org/packages/2.5/data/annotation/bin/windows/contrib/2.10/org.Hs.eg.db_2.3.6.zip'
Content type 'application/zip' length 37316242 bytes (35.6 Mb)
打开了URL
downloaded 35.6 Mb

试开URL’http://bioconductor.org/packages/2.5/bioc/bin/windows/contrib/2.10/simpleaffy_2.21.3.zip'
Content type 'application/zip' length 794649 bytes (776 Kb)
打开了URL
downloaded 776 Kb

试开URL’http://bioconductor.org/packages/2.5/bioc/bin/windows/contrib/2.10/affy_1.23.12.zip'
Content type 'application/zip' length 2033590 bytes (1.9 Mb)
打开了URL
downloaded 1.9 Mb

试开URL’http://bioconductor.org/packages/2.5/data/experiment/bin/windows/contrib/2.10/affydata_1.11.10.zip'
Content type 'application/zip' length 12756979 bytes (12.2 Mb)
打开了URL
downloaded 12.2 Mb

试开URL’http://bioconductor.org/packages/2.5/bioc/bin/windows/contrib/2.10/affyPLM_1.21.4.zip'
Content type 'application/zip' length 3968938 bytes (3.8 Mb)
打开了URL
downloaded 3.8 Mb

试开URL’http://bioconductor.org/packages/2.5/bioc/bin/windows/contrib/2.10/annaffy_1.17.2.zip'
Content type 'application/zip' length 371140 bytes (362 Kb)
打开了URL
downloaded 362 Kb

试开URL’http://bioconductor.org/packages/2.5/bioc/bin/windows/contrib/2.10/annotate_1.23.4.zip'
Content type 'application/zip' length 2202749 bytes (2.1 Mb)
打开了URL
downloaded 2.1 Mb

试开URL’http://bioconductor.org/packages/2.5/bioc/bin/windows/contrib/2.10/Biobase_2.5.8.zip'
Content type 'application/zip' length 2378491 bytes (2.3 Mb)
打开了URL
downloaded 2.3 Mb

试开URL’http://bioconductor.org/packages/2.5/bioc/bin/windows/contrib/2.10/biomaRt_2.1.0.zip'
Content type 'application/zip' length 315686 bytes (308 Kb)
打开了URL
downloaded 308 Kb

试开URL’http://bioconductor.org/packages/2.5/bioc/bin/windows/contrib/2.10/Biostrings_2.13.54.zip'
Content type 'application/zip' length 2149067 bytes (2.0 Mb)
打开了URL
downloaded 2.0 Mb

试开URL’http://bioconductor.org/packages/2.5/bioc/bin/windows/contrib/2.10/DynDoc_1.23.1.zip'
Content type 'application/zip' length 99928 bytes (97 Kb)
打开了URL
downloaded 97 Kb

试开URL’http://bioconductor.org/packages/2.5/bioc/bin/windows/contrib/2.10/gcrma_2.17.4.zip'
Content type 'application/zip' length 222812 bytes (217 Kb)
打开了URL
downloaded 217 Kb

试开URL’http://bioconductor.org/packages/2.5/bioc/bin/windows/contrib/2.10/genefilter_1.26.4.zip'
Content type 'application/zip' length 705409 bytes (688 Kb)
打开了URL
downloaded 688 Kb

试开URL’http://bioconductor.org/packages/2.5/bioc/bin/windows/contrib/2.10/geneplotter_1.23.3.zip'
Content type 'application/zip' length 1784562 bytes (1.7 Mb)
打开了URL
downloaded 1.7 Mb

试开URL’http://bioconductor.org/packages/2.5/data/annotation/bin/windows/contrib/2.10/hgu95av2.db_2.3.5.zip'
Content type 'application/zip' length 549126 bytes (536 Kb)
打开了URL
downloaded 536 Kb

试开URL’http://bioconductor.org/packages/2.5/bioc/bin/windows/contrib/2.10/limma_3.0.3.zip'
Content type 'application/zip' length 1205953 bytes (1.2 Mb)
打开了URL
downloaded 1.2 Mb

试开URL’http://bioconductor.org/packages/2.5/bioc/bin/windows/contrib/2.10/marray_1.23.0.zip'
Content type 'application/zip' length 5275041 bytes (5.0 Mb)
打开了URL
downloaded 5.0 Mb

试开URL’http://bioconductor.org/packages/2.5/bioc/bin/windows/contrib/2.10/multtest_2.1.3.zip'
Content type 'application/zip' length 1642453 bytes (1.6 Mb)
打开了URL
downloaded 1.6 Mb

试开URL’http://bioconductor.org/packages/2.5/bioc/bin/windows/contrib/2.10/vsn_3.13.7.zip'
Content type 'application/zip' length 1494717 bytes (1.4 Mb)
打开了URL
downloaded 1.4 Mb

试开URL’http://cran.fhcrc.org/bin/windows/contrib/2.10/xtable_1.5-5.zip'
Content type 'application/zip' length 177954 bytes (173 Kb)
打开了URL
downloaded 173 Kb

试开URL’http://bioconductor.org/packages/2.5/bioc/bin/windows/contrib/2.10/affyQCReport_1.23.1.zip'
Content type 'application/zip' length 229539 bytes (224 Kb)
打开了URL
downloaded 224 Kb

package 'DBI' successfully unpacked and MD5 sums checked
package 'RSQLite' successfully unpacked and MD5 sums checked
package 'bitops' successfully unpacked and MD5 sums checked
package 'affyio' successfully unpacked and MD5 sums checked
package 'preprocessCore' successfully unpacked and MD5 sums checked
package 'GO.db' successfully unpacked and MD5 sums checked
package 'KEGG.db' successfully unpacked and MD5 sums checked
package 'AnnotationDbi' successfully unpacked and MD5 sums checked
package 'XML' successfully unpacked and MD5 sums checked
package 'RCurl' successfully unpacked and MD5 sums checked
package 'IRanges' successfully unpacked and MD5 sums checked
package 'RColorBrewer' successfully unpacked and MD5 sums checked
package 'org.Hs.eg.db' successfully unpacked and MD5 sums checked
package 'simpleaffy' successfully unpacked and MD5 sums checked
package 'affy' successfully unpacked and MD5 sums checked
package 'affydata' successfully unpacked and MD5 sums checked
package 'affyPLM' successfully unpacked and MD5 sums checked
package 'annaffy' successfully unpacked and MD5 sums checked
package 'annotate' successfully unpacked and MD5 sums checked
package 'Biobase' successfully unpacked and MD5 sums checked
package 'biomaRt' successfully unpacked and MD5 sums checked
package 'Biostrings' successfully unpacked and MD5 sums checked
package 'DynDoc' successfully unpacked and MD5 sums checked
package 'gcrma' successfully unpacked and MD5 sums checked
package 'genefilter' successfully unpacked and MD5 sums checked
package 'geneplotter' successfully unpacked and MD5 sums checked
package 'hgu95av2.db' successfully unpacked and MD5 sums checked
package 'limma' successfully unpacked and MD5 sums checked
package 'marray' successfully unpacked and MD5 sums checked
package 'multtest' successfully unpacked and MD5 sums checked
package 'vsn' successfully unpacked and MD5 sums checked
package 'xtable' successfully unpacked and MD5 sums checked
package 'affyQCReport' successfully unpacked and MD5 sums checked

The downloaded packages are in
        C:\Documents and Settings\Administrator\Local Settings\Temp\RtmpCDatG2\downloaded_packages
>

  • 0
    点赞
  • 4
    收藏
    觉得还不错? 一键收藏
  • 0
    评论
评论
添加红包

请填写红包祝福语或标题

红包个数最小为10个

红包金额最低5元

当前余额3.43前往充值 >
需支付:10.00
成就一亿技术人!
领取后你会自动成为博主和红包主的粉丝 规则
hope_wisdom
发出的红包
实付
使用余额支付
点击重新获取
扫码支付
钱包余额 0

抵扣说明:

1.余额是钱包充值的虚拟货币,按照1:1的比例进行支付金额的抵扣。
2.余额无法直接购买下载,可以购买VIP、付费专栏及课程。

余额充值