笔记：linux/centos/ubuntu系统samtools软件安装

笔记：linux/centos/ubuntu系统samtools软件安装

1、数据库准备
centos系统

sudo yum install bzip2-devel
sudo yum install ncurses-libs
sudo yum install ncurses-devel 

ubuntu18.0系统

apt-get install bzip2 -y
apt-get install libncurses5-dev -y
apt-get install liblzma-dev 
apt-get install libghc-bzlib-prof
apt-get install libghc-ncurses-prof
apt-get install libghc-ncurses-dev

2、下载
然后在samtool同级目录下安装tslib http://www.htslib.org/download/
下载samtool(v1.9)

wget https://sourceforge.net/projects/samtools/files/latest/download?source=files

3、解压

tar -jxf samtools-1.9.tar.bz2
cd samtools-1.9

4、安装

make
make install

5、添加环境变量

echo 'export PATH=$PATH:/opt/biosoft/samtools-1.9/bin' >> /etc/profile

6、使用

1）创建fasta的索引

samtools faidx input.fa