ordercells函数;报错内容如下
Error in if (class(projection) != "matrix") projection <- as.matrix(projection) :
the condition has length > 1
In addition: Warning message:
In graph.dfs(dp_mst, root = root_cell, neimode = "all", unreachable = FALSE, :
Argument `neimode' is deprecated; use `mode' instead
#linux中尚未解决,但是本地电脑Rstudio中也是上述报错,解决方法如下
#参考https://github.com/ixxmu/mp_duty/issues/3404
下载包https://github.com/cole-trapnell-lab/monocle-release/files/10134172/monocle_2.26.0.tar.gz
#Rstudio中安装包
install.packages("D:/egde_download/monocle_2.26.0.tar.gz", repos = NULL, type = "source")
#即可正常运行
HSMM <- orderCells(HSMM)
Warning messages:
1: In graph.dfs(dp_mst, root = root_cell, neimode = "all", unreachable = FALSE, :
Argument `neimode' is deprecated; use `mode' instead
2: In graph.dfs(dp_mst, root = root_cell, neimode = "all", unreachable = FALSE, :
Argument `neimode' is deprecated; use `mode' instead
#warning无所谓
08-16
1349
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