LBA-ECO CD-04 叶片的光合作用和呼吸作用，塔帕若斯国家森林：2000-2006-CSDN博客

本文链接：https://blog.csdn.net/qq_31988139/article/details/148141500

LBA-ECO CD-04 Leaf Photosynthesis and Respiration, Tapajos National Forest: 2000-2006

简介

本数据集报告了以下测量结果：(1) 叶片光合作用响应曲线，该曲线反映了温度、叶龄、变暖、辐射和昼夜节律的影响；(2) 叶片在 30 和 37 摄氏度下的光呼吸速率。测量于 2000 年 6 月至 2006 年 2 月期间在巴西帕拉州塔帕若斯国家森林的 83 公里伐木森林塔、67 公里原始森林塔和塞卡弗洛雷斯塔的对照点进行。该数据集包含 7 个逗号分隔的 ASCII 数据文件。

摘要

Column	Heading	Units/format	Description
1	Set		Unique identifier given to each set of measurements
2	Obs		Observation number identifies consecutive measurements within a set
3	Common_name		Common name, or not provided
4	Scientific_name		Scientific name in the format Genus species or not provided
5	Family		Scientific family or not provided
6	Time	seconds	Seconds since start of set, actual measurements started at 20 minutes to allow for equilibration
7	Photo	umol CO2 m-2 s-1	Photosynthesis rate reported as micromol CO2 fixed per meter squared of leaf area per second (umol CO2 m-2 s-1)
8	Cond	mol H2O m-2 s-1	Stomatal conductance reported in moles of water per meter squared leaf area per second (mol H2O m-2 s-1)
9	Ci	umol CO2 mol air-1	Intercellular CO2 concentration reported as micromoles of CO2 per mol of air (umol CO2 mol air-1)
10	VpdL	kPa	Vapor pressure deficit of the leaf reported in kilopascals (kPa)
11	T_air	degrees C	Air temperature in the chamber in degrees Celsius (degrees C)
12	T_leaf	degrees C	Leaf temperature in degrees Celsius (degrees C)
13	CO2_ref	ppm	Atmospheric CO2 concentration in the reference chamber reported in parts per million (ppm)
14	H2O_ref	mmol H2O mol air-1	Atmospheric water vapor concentration in the reference chamber reported in millimoles of water per mole of air (mmol H2O mol air-1)
15	RH_ref	%	Relative humidity in the reference chamber reported in percentage (%)
16	Flow	umol s-1	Flow rate in chamber reported in micromoles of air per second (umol s-1)
17	PARi	umol m-2 s-1	Photosynthetically active radiation (PAR) flux in the chamber reported as micromoles of photons per meter squared per second (umol m-2 s-1): all wavelengths between 400 and 700 nm included in this measurement
18	Hour	digital hours	Local time using a 24 hour clock and presented in a digital hour format. When a continuous sampling set included samples on two calender days the time values on day 2 are time +24 for ease of x axis graphing ie 25.0 = 1 am on day 2
19	Calibration		Observation from internal calibration mechanism

Missing data values are represented as -9999

File 2: CD04_Photosynthesis_Temp_Curves_Santarem.csv

We made leaf-level measurements at two field sites, working off a 45 m tall scaffold tower at km 67 and a 30 m tall tower at km 83 (Doughty and Goulden, 2008). The specific site for each set of measurements was not provided.

Column	Heading	Units/format	Description
1	Set		Unique identifier given to each set of measurements
2	Obs		Observation number within a set
3	Year	YYYY	Sampling date: year
4	Month	MM	Sampling date: month (1-12)
5	Day	DD	Day of month (1-31)
6	Time	HH:MM:SS	Sampling time in local time (GMT -4) and 24 hour clock
7	Common_name		common name
8	Scientific_name		Scientific name in the format Genus species
9	Family		Scientific family
10	Photo	umol CO2 m-2 s-1	Photosynthesis rate reported as micromol CO2 fixed per meter squared of leaf area per second (umol CO2 m-2 s-1)
11	Cond	mol H2O m-2 s-1	Stomatal conductance reported in moles of water per meter squared leaf area per second (mol H2O m-2 s-1)
12	Ci	umol CO2 mol air-1	Intercellular CO2 concentration reported as micromols of CO2 per mol of air (umol CO2 mol air-1)
13	VpdL	kPa	Vapor pressure deficit of the leaf reported in kilopascals (kPa)
14	T_air	degrees C	Air temperature in the chamber in degrees Celsius (degrees C)
15	T_leaf	degrees C	Leaf temperature in degrees Celsius (degrees C)
16	CO2_ref	ppm	Atmospheric CO2 concentration in the reference chamber reported in parts per million (ppm)
17	H2O_ref	mmol H2O mol air-1	Atmospheric water vapor concentration in the reference chamber reported in millimoles of water per mole of air (mmol H2O mol air-1)
18	RH_ref	%	Relative humidity in the reference chamber reported in percentage (%)
19	Flow	umol s-1	Flow rate in chamber reported in micromoles of air per second (umol s-1)
20	PARi	umol s-1	Photosynthetically active radiation (PAR) flux in the chamber reported as micromoles of photons per meter squared per second (umol m-2 s-1): all wavelengths between 400 and 700 nm included in this measurement

Missing data values are represented as -9999

File 3: CD04_Photosynthesis_Warming_30_Santarem.csv

Leaf-level measurements at three field sites, km 67, km 83, and Seca Floresta. The specific site for each set of measurements was not provided.

Column	Heading	Units/format	Description
1	Year	YYYY	Sampling date: year
2	Month	MM	Sampling date: month (1-12)
3	Day	DD	Sampling date: day ( 1-31)
4	Day_of _year	day	Sampling date as day of year (1-366)
5	Common_name		Common name: gap refers to pioneer species found in a gap located approximately 50 m from the tower
6	Scientific_name		Scientific name in the format Genus species or not provided
7	Family		Scientific family or not provided
8	Leaf_ID		Leaf ID number
9	Photo	umol CO2 m-2 s-1	Photosynthesis rate reported as micromol CO2 fixed per meter squared of leaf area per second (umol CO2 m-2 s-1)
10	Cond	mol H2O m-2 s-1	Stomatal conductance reported in moles of water per meter squared leaf area per second (mol H2O m-2 s-1)
11	Ci	umol CO2 mol air-1	Intercellular CO2 concentration reported as micromols of CO2 per mol of air (umol CO2 mol air-1)
12	T_leaf	degrees C	Leaf temperature in degrees Celsius (degrees C)
13	Warm		Leaf warmed (1=yes, 0=no)

Missing data values are represented as -9999

File 4: CD04_Photosynthesis_Warming_37_Santarem.csv

Leaf-level measurements at three field sites, km 67, km 83, and Seca Floresta. The specific site for each set of measurements was not provided.

Column	Heading	Units/format	Description
1	Year	YYYY	Sampling date: year
2	Month	MM	Sampling date: month (1-12)
3	Day	DD	Sampling date: day ( 1-31)
4	Day_of _year	day	Sampling date as day of year (1-366)
5	Common_name		Common name (gap refers to pioneer species found in a gap located approximately 50 m from the tower)
6	Scientific_name		Scientific name in the format Genus species or "not provided"
7	Family		Scientific family or "not provided"
8	Leaf_ID		Leaf ID number
9	Photo_initial	umol CO2 m-2 s-1	Initial photosynthesis rate reported as micromol CO2 fixed per meter squared of leaf area per second (umol CO2 m-2 s-1)
10	Photo_post	umol m-2 s-1	Photosynthesis rate after 3-5 minutes of incubation reported as micromol CO2 fixed per meter squared of leaf area per second (umol CO2 m-2 s-1)
11	Delta_photo	umol m-2 s-1	Difference between initial and post incubation photosynthesis rates
12	Cond_initial	mol m-2 s-1	Initial stomatal conductance reported in moles of water per meter squared leaf area per second (mol H2O m-2 s-1)
13	Cond_post	mol m-2 s-1	Stomatal conductance after 3-5 minutes of incubation reported in moles of water per meter squared leaf area per second (mol H2O m-2 s-1)
14	Delta_cond	mol m-2 s-1	Difference between initial and post incubation conductance rates
15	Ci_initial	umol CO2 mol air-1	Initial intercellular CO2 concentration reported as micromols of CO2 per mol of air (umol CO2 mol air-1)
16	Ci_post	umol CO2 mol air-1	Intercellular CO2 concentration after 3-5 minutes of incubation reported as micromols of CO2 per mol of air (umol CO2 mol air-1)
17	T_leaf	degrees C	Leaf temperature in degrees Celsius (degrees C)
18	Warm		Leaf warmed (1=yes, 0=no)

Missing data values are represented as -9999

File 5: CD04_Photorespiration_Warming_Santarem.csv

Leaf-level measurements at three field sites, km 67, km 83, and Seca Floresta. The specific site for each set of measurements was not provided.

Column	Heading	Units/format	Description
1	Year	YYYY	Sampling date: year
2	Month	MM	Sampling date: month (1-12)
3	Day	DD	Sampling date: day ( 1-31)
4	Common_name		Common name: gap refers to pioneer species found in a gap located approximately 50 m from the tower
5	Scientific_name		Scientific name in the format Genus species or "not provided"
6	Family		Scientific family or not provided
7	Leaf_ID		Leaf ID number
8	Oxygen	%	Oxygen level (2% or ambient)
9	Photo	umol CO2 m-2 s-1	Photosynthesis rate reported as micromol CO2 fixed per meter squared of leaf area per second (umol CO2 m-2 s-1)
10	Cond	mol H2O m-2 s-1	Stomatal conductance reported in moles of water per meter squared leaf area per second (mol H2O m-2 s-1)
11	Ci	umol CO2 mol air-1	Intercellular CO2 concentration reported as micromols of CO2 per mol of air (umol CO2 mol air-1)
12	T_leaf	degrees C	Leaf temperature in degrees Celsius (degrees C)

Missing data values are represented as -9999

File 6: CD04_Photosynthesis_Subcanopy_Lightcurves_Santarem.csv

Understory species leaf level measurements were made at two field sites, km 67 and km 83. Neither the specific site nor the specific date for sets of measurements were provided.

Column	Heading	Units/format	Description
1	Set		Unique identifier given to each set of measurements
2	Obs		Observation number within a set
3	Time	HH:MM:SS	Start time for measurement set in local time (GMT -4) on a 24 hour clock
4	Height	m	Canopy height from the ground measured in meters
5	Time	seconds	Seconds since start of measurement
6	Photo	umol CO2 m-2 s-1	Photosynthesis rate reported as micromol CO2 fixed per meter squared of leaf area per second (umol CO2 m-2 s-1)
7	Cond	mol H2O m-2 s-1	Stomatal conductance reported in moles of water per meter squared leaf area per second (mol H2O m-2 s-1)
8	Ci	umol CO2 mol air-1	Intercellular CO2 concentration reported as micromols of CO2 per mol of air (umol CO2 mol air-1)
9	VpdL	kPa	Vapor pressure deficit of the leaf reported in kilopascals (kPa)
10	T_air	degrees C	Air temperature in the chamber in degrees Celsius (degrees C)
11	T_leaf	degrees C	Leaf temperature in degrees Celsius (degrees C)
12	C02_ref	ppm	Atmospheric CO2 concentration in the reference chamber reported in parts per million (ppm)
13	H20_ref	mmol H2O mol air-1	Atmospheric water vapor concentration in the reference chamber reported in millimoles of water per mole of air (mmol H2O mol air-1)
14	RH_ref	%	Relative humidity in the reference chamber reported in percentage (%)
15	Flow	umol s-1	Flow rate in chamber reported in micromoles of air per second (umol s-1)
16	PARi	umol m-2 s-1	Photosynthetically active radiation (PAR) flux in the chamber reported as micromoles of photons per meter squared per second (umol m-2 s-1): all wavelengths between 400 and 700 nm included in this measurement

Missing data values are represented as -9999

File 7: CD04_Photosynthesis_Leaf_Age_Santarem.csv

Leaf-level measurements at three field sites, km 67, km 83, and Seca Floresta. The specific site for measurements was not provided.

Column	Column Heading	Units/format	Description
1	Year	YYYY	Sampling date: year
2	Month	MM	Sampling date: month (1-12)
3	Day	DD	Sampling date: day ( 1-31)
4	Day_of _year	day	Sampling date as day of year (1-366)
5	Common_name		Common name: gap refers to pioneer species found in a gap located approximately 50 m from the tower
6	Scientific_name		Scientific name in the format Genus species
7	Family		Scientific family
8	Leaf_ID		Leaf number
9	Photo	umol m-2 s-1	Photosynthesis rate reported as micromol CO2 fixed per meter squared of leaf area per second (umol CO2 m-2 s-1)
10	Cond	mol H2O m-2 s-1	Stomatal conductance reported in moles of water per meter squared leaf area per second (mol H2O m-2 s-1)
11	Ci	umol CO2 mol air-1	Intercellular CO2 concentration reported as micromols of CO2 per mol of air (umol CO2 mol air-1)
12	T_leaf	degrees C	Leaf temperature in degrees Celsius (degrees C)
13	Age_leaf	years	Approximate age of leaf in years

Missing data values are represented as -9999

Site boundaries: (All latitude and longitude given in decimal degrees)

Site (Region)	Westernmost Longitude	Easternmost Longitude	Northernmost Latitude	Southernmost Latitude	Geodetic Datum
Para Western (Santarem) - km 83 Logged Forest Tower (Para Western (Santarem))	-54.9707	-54.9707	-3.017	-3.017	World Geodetic System, 1984 (WGS-84)
Para Western (Santarem) - km 67 Seca-Floresta Site (Para Western (Santarem))	-55.00000	-55.00000	-2.75000	-2.75000	World Geodetic System, 1984 (WGS-84)
Para Western (Santarem) - km 67 Primary Forest Tower Site (Para Western (Santarem))	-54.95900	-54.95900	-2.85700	-2.85700	World Geodetic System, 1984 (WGS-84)

代码

!pip install leafmap
!pip install pandas
!pip install folium
!pip install matplotlib
!pip install mapclassify
 
import pandas as pd
import leafmap
 
url = "https://github.com/opengeos/NASA-Earth-Data"
df = pd.read_csv(url, sep="\t")
df
 
leafmap.nasa_data_login()
 
 
results, gdf = leafmap.nasa_data_search(
    short_name="CD04_Leaf_Level_Gas_Exchange_1060",
    cloud_hosted=True,
    bounding_box=(-54.97, -3.02, -54.96, -2.75),
    temporal=("2000-06-01", "2006-02-28"),
    count=-1,  # use -1 to return all datasets
    return_gdf=True,
)
 
 
gdf.explore()
 
#leafmap.nasa_data_download(results[:5], out_dir="data")

引用

Doughty, C., Sousa, A, and Figueira, M. 2012. LBA-ECO CD-04 Leaf Photosynthesis and Respiration, Tapajos National Forest: 2000-2006. Available on-line [http://daac.ornl.gov] from Oak Ridge National Laboratory Distributed Active Archive Center, Oak Ridge, Tennessee, U.S.A.