一些装不上的软件，报错

安装arila字体

sudo apt --fix-broken install cabextract libmspack0
wget http://httpredir.debian.org/debian/pool/contrib/m/msttcorefonts/ttf-mscorefonts-installer_3.6_all.deb
sudo dpkg -i ttf-mscorefonts-installer_3.6_all.deb
sudo fc-cache
fc-match Arial
fc-match Times

Pan-cancer single cell landscape of tumor-infiltrating T cells

sudo apt-get install -y r-base-dev
sudo apt-get install -y liblapack-dev libblas-dev libssl-dev libcurl4-openssl-dev libxml2-dev
sudo apt-get install -y libharfbuzz-dev libfribidi-dev
devtools::install_github("r-lib/textshaping")
devtools::install_github('r-lib/ragg')
devtools::install_github('VPetukhov/ggrastr', build_vignettes = TRUE)
devtools::install_github("Japrin/sscVis",dependencies = T)
BiocManager::install("scran",ask = F,update = F, force = T)
BiocManager::install("SC3",ask = F,update = F, force = T)
devtools::install_github("Japrin/sscClust",dependencies = T)
devtools::install_github("Japrin/scPip",dependencies = T)

monocle3

sudo apt-get install -y cmake
sudo apt-get install -y libharfbuzz-dev libfribidi-dev
sudo apt-get install -y libudunits2-dev

eoffice

# sudo apt-get install libpng12-0 libpng12-dev
# sudo apt-get install libjpeg62 libjpeg62-dev
# sudo add-apt-repository -y ppa:cran/imagemagick
# 如果下面无法安装，先运行上面
sudo apt-get install -y libmagick++-dev
install.packages('eoffice')

R 语言安装 v8

# 首先现在终端安装依赖
sudo apt install libv8-dev -y

#然后进入R环境安装
install.packages('V8')

dyno （R）

先根据官方的链接下载Docker

https://docs.docker.com/engine/install/ubuntu/

# 安装依赖
sudo apt-get update

sudo apt-get install \
    ca-certificates \
    curl \
    gnupg \
    lsb-release

# 添加官方镜像
 curl -fsSL https://download.docker.com/linux/ubuntu/gpg | sudo gpg --dearmor -o /usr/share/keyrings/docker-archive-keyring.gpg


echo \
  "deb [arch=$(dpkg --print-architecture) signed-by=/usr/share/keyrings/docker-archive-keyring.gpg] https://download.docker.com/linux/ubuntu \
  $(lsb_release -cs) stable" | sudo tee /etc/apt/sources.list.d/docker.list > /dev/null


# 安装Docker 引擎
sudo apt-get update
sudo apt-get install docker-ce docker-ce-cli containerd.io

# 验证是否安装成功
sudo docker run hello-world

根据官方的链接安装Singularity

https://github.com/hpcng/singularity/blob/master/INSTALL.md

# 安装依赖
# Ensure repositories are up-to-date
sudo apt-get update
# Install debian packages for dependencies
sudo apt-get install -y \
    build-essential \
    libseccomp-dev \
    pkg-config \
    squashfs-tools \
    cryptsetup

# 安装Go
export VERSION=1.17 OS=linux ARCH=amd64  # change this as you need

wget -O /tmp/go${GOVERSION}.${OS}-${ARCH}.tar.gz \
  https://dl.google.com/go/go${GOVERSION}.${OS}-${ARCH}.tar.gz
sudo tar -C /usr/local -xzf /tmp/go${GOVERSION}.${OS}-${ARCH}.tar.gz

# 添加环境变量
echo 'export GOPATH=${HOME}/go' >> ~/.zshrc
echo 'export PATH=/usr/local/go/bin:${PATH}:${GOPATH}/bin' >> ~/.zshrc
source ~/.zshrc

curl -sSfL https://raw.githubusercontent.com/golangci/golangci-lint/master/install.sh | sh -s -- -b $(go env GOPATH)/bin


# 下载最新发行版
# https://github.com/hpcng/singularity/releases
wget -c https://github.com/hpcng/singularity/releases/download/v3.8.3/singularity-3.8.3.tar.gz
x singularity-3.8.3.tar.gz  

cd singularity
./mconfig

./mconfig
cd ./builddir
make
sudo make install
singularity --version