GATB=The Genome Analysis Toolbox with de-Bruijn graph 带有de-Bruijn图的基因组分析工具箱

带有de-Bruijn图的基因组分析工具箱

Software

Depending on your needs, you can choose one the following software components. 根据您的需要，您可以选择以下软件组件之一。

What would you like to do ?	Download
Count K-mer in sequences	DSK
Compress reads	Leon
Correct reads	Bloocoo
Correct errors on long reads	LoRDEC LoRMA
Construct compacted de Bruijn graphs (unitigs)	BCALM
Assemble reads	Minia
Targeted assembly	Mapsembler2
Discover SNPs and indels from non-assembled reads without reference genome	DiscoSNP++
Detect insertion variants	MindTheGap
Discover inversion from non-assembled data	TakeABreak
Comparative metagenomics for large-scale datasets	Simka
Detect similar reads from potentially large read set	rconnector
Run GATB-Tools using Docker	Docker container
de-novo assembly pipeline (error correction / contigs / scaffolding) for genomes and meta-genomes	de-novo pipeline
Develop new software relying on GATB core algorithms	GATB-CORE library

 

• Start using GATB

  Download software
  Create new software
  GATB Online Tutorial
   

• Recent Posts

  • Next GATB Programming day — July 2019 — Nantes (France) 2019/05/29
  • GATB Programming day — April 2018 — Paris 2018/02/20
  • GATB programming day – pre-recomb seq – registration 2018/02/20

• GATB softwares made by
  
  Research Team

What is GATB ?

The Genome Analysis Toolbox with de-Bruijn graph (GATB) provides a set of highly efficient algorithms to analyse NGS data sets. These methods enable the analysis of data sets of any size on multi-core desktop computers, including very huge amount of reads data coming from any kind of organisms such as bacteria, plants, animals and even complex samples (e.g. metagenomes).

带有de-Bruijn图的基因组分析工具箱(GATB)提供了一套高效的算法来分析NGS数据集。这些方法能够在多核台式计算机上分析任何大小的数据集，包括从任何种类的生物体(如细菌、植物、动物，甚至是复杂的样本)读取的大量数据。

GATB system offers to scientists a complete panel of ready-to-use software components, as follows:

GATB系统为科学家提供了一个完整的现成的软件组件面板，如下所示

At the heart of the system is GATB-Core, a set of new highly efficient algorithms relying on very compact data structures. Key features of GATB-based softwares are:

系统的核心是GATB-Core，这是一套新的高效算法，依赖于非常紧凑的数据结构。基于gatb的软件的主要特点是