批量下载pubMLST中fasta文件的油猴脚本

在华西的小伙伴提了一个需求，从pubMLST数据库中批量下载的FASTA全基因组文件。

// ==UserScript==
// @name         New Userscript
// @namespace    http://tampermonkey.net/
// @version      2024-09-16
// @description  try to take over the world!
// @author       You
// @match        https://pubmlst.org/bigsdb*
// @grant        none
// ==/UserScript==

(function() {
    'use strict';

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    // 显示弹窗，注意在非浏览器环境下此操作无效

    function downloadDataAsFile(data, filename) {
        var blob = new Blob([data], {type: "text/plain;charset=utf-8"});
        var url = window.URL.createObjectURL(blob);
        var link = document.createElement("a");
        link.href = url;
        link.download = filename || "output.txt";
        document.body.appendChild(link);
        link.click();
        document.body.removeChild(link); // 清理
        window.URL.revokeObjectURL(url); // 释放对象URL
    }

    // 遍历数组并为每个ID发起请求
    ids.forEach(function(id) {
        var id_url = "https://pubmlst.org/bigsdb?db=pubmlst_saureus_isolates&page=downloadSeqbin&isolate_id=" + id.toString();

        fetch(id_url)
            .then(function(response) {
                if (!response.ok) {
                    throw new Error("HTTP error " + response.status);
                }
                // 假设我们期望的是文本形式的数据
                return response.text(); // 如果是JSON数据，使用 response.json()
            })
            .then(function(data) {
                // 在这里处理数据，例如输出到控制台
                downloadDataAsFile(data, id.toString()+'.fasta');
            })
            .catch(function(error) {
                // 捕获并处理任何发生的错误
                console.error('Error fetching data:', error);
            });
    });
})();