【无标题】

clusterProfiler运行gseKEGG报错问题

Reading KEGG annotation online:

fail to download KEGG data...

Error in download.KEGG.Path(species) : 

  'species' should be one of organisms listed in 'http://www.genome.jp/kegg/catalog/org_list.html'...

In addition: Warning message:

In utils::download.file(url, quiet = TRUE, method = method, ...) :

  URL 'https://rest.kegg.jp/link/hsa/pathway': status was 'Failure when receiving data from the peer'

原因

clusterProfiler包有下载协议
修改协议即可：

#安装包
install.packages("R.utils")
#加载包
library(R.utils)
#修改协议
R.utils::setOption("clusterProfiler.download.method","auto")

再次运行，完美！