Linux安装conda Ubuntu安装conda Linux安装百度云 Ubuntu安装百度云 服务器安装百度云 Linux上传到百度云 Linux上传文件到百度云 Linux从百度云下载_YoungLeelight的博客-CSDN博客
前置内容 :在linux 中安装conda
$ nohup wget -c https://repo.anaconda.com/archive/Anaconda3-2022.10-Linux-x86_64.sh &
1.建立rna环境
2.conda install scanpy 安装scanpy
conda install -c conda-forge scanpy python-igraph leidenalg
查看 list 发现scanpy安装好了
$ conda list
# packages in environment at /home/st8/ssd2/tree119/miniconda3/envs/rna:
#
# Name Version Build Channel
_libgcc_mutex 0.1 conda_forge https://mirrors.bfsu.edu.cn/anaconda/cloud/conda-forge
_openmp_mutex 4.5 2_kmp_llvm https://mirrors.bfsu.edu.cn/anaconda/cloud/conda-forge
anndata 0.7.8 py37h89c1867_1 https://mirrors.bfsu.edu.cn/anaconda/cloud/conda-forge
blas 1.0 mkl https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
blosc 1.21.0 h4ff587b_1 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
bottleneck 1.3.5 py37h7deecbd_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
brotlipy 0.7.0 py37h27cfd23_1003 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
bz2file 0.98 py37h06a4308_1 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
bzip2 1.0.8 h7b6447c_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
c-ares 1.18.1 h7f8727e_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
ca-certificates 2022.10.11 h06a4308_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
certifi 2022.12.7 py37h06a4308_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
cffi 1.15.1 py37h5eee18b_2 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
charset-normalizer 2.0.4 pyhd3eb1b0_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
click 8.0.4 py37h06a4308_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
colorama 0.4.5 py37h06a4308_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
coloredlogs 15.0.1 py37h06a4308_1 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
colormath 3.0.0 py_2 https://mirrors.bfsu.edu.cn/anaconda/cloud/conda-forge
commonmark 0.9.1 pyhd3eb1b0_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
cryptography 38.0.1 py37h9ce1e76_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
curl 7.86.0 h5eee18b_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
cutadapt 1.18 py37h14c3975_1 bioconda
cycler 0.11.0 pyhd3eb1b0_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
dataclasses 0.8 pyh6d0b6a4_7 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
dbus 1.13.18 hb2f20db_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
decorator 4.4.0 py37_1 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
dunamai 1.15.0 pyhd8ed1ab_0 https://mirrors.bfsu.edu.cn/anaconda/cloud/conda-forge
expat 2.4.9 h6a678d5_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
fastqc 0.11.9 hdfd78af_1 bioconda
flit-core 3.6.0 pyhd3eb1b0_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
font-ttf-dejavu-sans-mono 2.37 hd3eb1b0_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
fontconfig 2.14.1 hef1e5e3_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
freetype 2.12.1 h4a9f257_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
future 0.18.2 py37_1 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
gdbm 1.18 hd4cb3f1_4 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
get_version 3.5.4 pyhd8ed1ab_0 https://mirrors.bfsu.edu.cn/anaconda/cloud/conda-forge
gettext 0.21.0 hf68c758_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
git 2.34.1 pl5262hc120c5b_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
glib 2.69.1 he621ea3_2 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
h5py 2.10.0 py37h7918eee_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
hdf5 1.10.4 hb1b8bf9_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
hisat2 2.2.1 h87f3376_4 bioconda
htslib 1.16 h6bc39ce_0 bioconda
humanfriendly 10.0 py37h06a4308_1 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
icu 58.2 he6710b0_3 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
idna 3.4 py37h06a4308_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
importlib-metadata 4.11.3 py37h06a4308_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
importlib_metadata 4.11.3 hd3eb1b0_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
intel-openmp 2021.4.0 h06a4308_3561 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
jemalloc 5.2.1 h2531618_5 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
jinja2 3.1.2 py37h06a4308_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
joblib 1.1.1 py37h06a4308_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
kiwisolver 1.4.2 py37h295c915_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
krb5 1.19.2 hac12032_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
ld_impl_linux-64 2.38 h1181459_1 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
legacy-api-wrap 1.2 py_0 https://mirrors.bfsu.edu.cn/anaconda/cloud/conda-forge
libboost 1.73.0 h28710b8_12 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
libcurl 7.86.0 h91b91d3_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
libdeflate 1.13 h166bdaf_0 https://mirrors.bfsu.edu.cn/anaconda/cloud/conda-forge
libedit 3.1.20210910 h7f8727e_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
libev 4.33 h7f8727e_1 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
libffi 3.4.2 h6a678d5_6 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
libgcc-ng 12.2.0 h65d4601_19 https://mirrors.bfsu.edu.cn/anaconda/cloud/conda-forge
libgfortran-ng 7.5.0 ha8ba4b0_17 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
libgfortran4 7.5.0 ha8ba4b0_17 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
libllvm10 10.0.1 hbcb73fb_5 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
libnghttp2 1.46.0 hce63b2e_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
libpng 1.6.37 hbc83047_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
libssh2 1.10.0 h8f2d780_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
libstdcxx-ng 11.2.0 h1234567_1 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
libxcb 1.15 h7f8727e_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
libxml2 2.9.14 h74e7548_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
libzlib 1.2.13 h166bdaf_4 https://mirrors.bfsu.edu.cn/anaconda/cloud/conda-forge
llvm-openmp 14.0.6 h9e868ea_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
llvmlite 0.36.0 py37h612dafd_4 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
lz4-c 1.9.3 h295c915_1 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
lzo 2.10 h7b6447c_2 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
lzstring 1.0.4 py_1001 https://mirrors.bfsu.edu.cn/anaconda/cloud/conda-forge
markdown 3.3.4 py37h06a4308_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
markupsafe 2.1.1 py37h7f8727e_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
matplotlib-base 3.1.3 py37hef1b27d_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
mkl 2021.4.0 h06a4308_640 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
mkl-service 2.4.0 py37h7f8727e_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
mkl_fft 1.3.1 py37hd3c417c_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
mkl_random 1.2.2 py37h51133e4_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
mock 4.0.3 pyhd3eb1b0_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
multiqc 1.13 pyhdfd78af_0 https://mirrors.bfsu.edu.cn/anaconda/cloud/bioconda
natsort 7.1.1 pyhd3eb1b0_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
ncurses 6.3 h5eee18b_3 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
networkx 2.5.1 pyhd8ed1ab_0 https://mirrors.bfsu.edu.cn/anaconda/cloud/conda-forge
numba 0.53.1 py37ha9443f7_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
numexpr 2.8.4 py37he184ba9_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
numpy 1.21.5 py37h6c91a56_3 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
numpy-base 1.21.5 py37ha15fc14_3 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
openjdk 11.0.13 h87a67e3_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
openssl 1.1.1s h7f8727e_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
packaging 22.0 py37h06a4308_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
pandas 1.3.5 py37h8c16a72_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
patsy 0.5.2 py37h06a4308_1 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
pcre 8.45 h295c915_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
pcre2 10.37 he7ceb23_1 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
perl 5.34.0 h5eee18b_2 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
pigz 2.6 h27cfd23_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
pip 22.2.2 py37h06a4308_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
pycparser 2.21 pyhd3eb1b0_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
pygments 2.11.2 pyhd3eb1b0_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
pynndescent 0.5.4 pyhd3eb1b0_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
pyopenssl 22.0.0 pyhd3eb1b0_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
pyparsing 3.0.9 py37h06a4308_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
pysocks 1.7.1 py37_1 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
pytables 3.6.1 py37h71ec239_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
python 3.7.15 h7a1cb2a_1 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
python-dateutil 2.8.2 pyhd3eb1b0_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
python_abi 3.7 2_cp37m https://mirrors.bfsu.edu.cn/anaconda/cloud/conda-forge
pytz 2022.7 py37h06a4308_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
pyyaml 6.0 py37h7f8727e_1 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
readline 8.2 h5eee18b_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
requests 2.28.1 py37h06a4308_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
rich 12.5.1 py37h06a4308_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
rich-click 1.5.2 pyhd8ed1ab_0 https://mirrors.bfsu.edu.cn/anaconda/cloud/conda-forge
salmon 0.13.1 h86b0361_0 bioconda
samtools 1.16.1 h6899075_1 bioconda
scanpy 1.8.2 pyhd8ed1ab_0 https://mirrors.bfsu.edu.cn/anaconda/cloud/conda-forge
scikit-learn 1.0.2 py37h51133e4_1 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
scipy 1.7.3 py37hc147768_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
seaborn 0.12.1 py37h06a4308_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
setuptools 65.5.0 py37h06a4308_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
simplejson 3.17.6 py37h7f8727e_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
sinfo 0.3.1 py_0 https://mirrors.bfsu.edu.cn/anaconda/cloud/conda-forge
six 1.16.0 pyhd3eb1b0_1 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
spectra 0.0.11 py_1 https://mirrors.bfsu.edu.cn/anaconda/cloud/conda-forge
sqlite 3.40.0 h5082296_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
statsmodels 0.13.2 py37h7f8727e_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
stdlib-list 0.8.0 pyhd8ed1ab_0 https://mirrors.bfsu.edu.cn/anaconda/cloud/conda-forge
subread 2.0.1 h7132678_2 bioconda
tbb 2020.2 h4bd325d_4 https://mirrors.bfsu.edu.cn/anaconda/cloud/conda-forge
threadpoolctl 2.2.0 pyh0d69192_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
tk 8.6.12 h1ccaba5_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
tornado 6.2 py37h5eee18b_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
tqdm 4.64.1 py37h06a4308_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
trim-galore 0.6.7 hdfd78af_0 bioconda
typing_extensions 4.4.0 py37h06a4308_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
umap-learn 0.5.3 py37h89c1867_0 https://mirrors.bfsu.edu.cn/anaconda/cloud/conda-forge
urllib3 1.26.12 py37h06a4308_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
wheel 0.37.1 pyhd3eb1b0_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
xopen 0.7.3 py_0 bioconda
xz 5.2.8 h5eee18b_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
yaml 0.2.5 h7b6447c_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
zipp 3.8.0 py37h06a4308_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
zlib 1.2.13 h166bdaf_4 https://mirrors.bfsu.edu.cn/anaconda/cloud/conda-forge
zstd 1.5.2 ha4553b6_0 https://mirrors.bfsu.edu.cn/anaconda/pkgs/main
3.进入python
4.此时import scanpy就运行成功了
可以进行相关分析