1-1. install circos-0.69-6 on redhat linux server 7

#显示当前路径
[arthur@localhost Desktop]$ pwd
/home/arthur/Desktop
#返回当前用户主目录
[arthur@localhost Desktop]$ cd ~
[arthur@localhost ~]$ ls
Desktop  Documents  Downloads  Music  Pictures  Public  Templates  Videos
#进入根目录
[arthur@localhost Downloads]$ cd /
[arthur@localhost /]$ ls
bin  boot  dev  etc  home  lib  lib64  media  mnt  opt  parser.out  parsetab.py  proc  root  run  sbin  srv  sys  tmp  usr  var
#进入mnt 目录
[arthur@localhost /]$ cd mnt
[arthur@localhost mnt]$ ls
#切换用户
[arthur@localhost mnt]$ su
Password: 
#abrt abrt (automatic bug report tool)服务将系统bug和SELinux收集汇报给Bugzilla以方便开发
#者修复。
ABRT has detected 1 problem(s). For more info run: abrt-cli list --since 1542191741
[root@localhost mnt]# cd /
#win10安装Ubuntu子系统后，磁盘会挂载在mnt下
[root@localhost /]# cd /mnt/d
#虚拟机中则没有挂载
bash: cd: /mnt/d: No such file or directory
[root@localhost /]# pwd
/
#su 命令没有提示切换用户
[root@localhost /]# su
#连续两次exit后退出root用户
[root@localhost /]# exit
exit
[root@localhost /]# exit
exit
#返回用户主目录
[arthur@localhost mnt]$ cd ~
[arthur@localhost ~]$ pwd
/home/arthur
#查看perl路径
[arthur@localhost ~]$ which perl
[/usr/bin/perl
#查看circos路径，发现没有添加
[arthur@localhost ~]$ which circos
/usr/bin/which: no circos in (/usr/lib64/qt-3.3/bin:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin)


#创建BGA2017/Course——material/June08 目录，路径多个目录不存在，则分别创建
[arthur@localhost ~]$ mkdir BGA2017/Course_material/June08/
mkdir: cannot create directory ‘BGA2017/Course_material/June08/’: No such file or directory
[arthur@localhost ~]$ mkdir BGA2017
[arthur@localhost ~]$ ls
BGA2017  Desktop  Documents  Downloads  Music  Pictures  Public  Templates  Videos
[arthur@localhost ~]$ cd BGA2017
[arthur@localhost BGA2017]$ mkdir Course_material
[arthur@localhost BGA2017]$ cd Course_material/
[arthur@localhost Course_material]$ mkdir June08
[arthur@localhost Course_material]$ cd June08/
[arthur@localhost June08]$ ls
[arthur@localhost June08]$ pwd
/home/arthur/BGA2017/Course_material/June08
#解压软件包，not in gzip format, "tar xvf " instead of " tar xvzf" 
[arthur@localhost June08]$ tar xvfz /home/arthur/BGA2017/Course_material/June08/circos-course-2017.tar 

gzip: stdin: not in gzip format
tar: Child returned status 1
tar: Error is not recoverable: exiting now
[arthur@localhost June08]$ tar xvf /home/arthur/BGA2017/Course_material/June08/circos-course-2017.tar 
circos-course/README
circos-course/handout/
circos-course/handout/session-1-preamble.pdf
circos-course/handout/session-1.pdf
circos-course/handout/session-2.pdf
circos-course/handout/session-3.pdf
circos-course/handout/session-4.pdf
circos-course/handout/session-5.ai
circos-course/handout/session-6.pdf
circos-course/handout/session-7.pdf
circos-course/session/
circos-course/session/1/
circos-course/session/1/1/
circos-course/session/1/1/circos.png
circos-course/session/1/1/circos.svg
circos-course/session/1/1/etc/
circos-course/session/1/1/etc/circos.conf
circos-course/session/1/1/etc/ideogram.conf
circos-course/session/1/1/misc/
circos-course/session/1/1/misc/brewer-palette.png
circos-course/session/1/10/
circos-course/session/1/10/circos.png
circos-course/session/1/10/etc/
circos-course/session/1/10/etc/circos.conf
circos-course/session/1/10/etc/ideogram.conf
circos-course/session/1/10/etc/ticks.conf
circos-course/session/1/11/
circos-course/session/1/11/circos.png
circos-course/session/1/11/etc/
circos-course/session/1/11/etc/circos.conf
circos-course/session/1/11/etc/ideogram.conf
circos-course/session/1/11/etc/ticks.conf
circos-course/session/1/12/
circos-course/session/1/12/circos.png
circos-course/session/1/12/etc/
circos-course/session/1/12/etc/circos.conf
circos-course/session/1/12/etc/ideogram.conf
circos-course/session/1/12/etc/ticks.conf
circos-course/session/1/2/
circos-course/session/1/2/circos.png
circos-course/session/1/2/etc/
circos-course/session/1/2/etc/circos.conf
circos-course/session/1/2/etc/ideogram.conf
circos-course/session/1/3/
circos-course/session/1/3/circos.png
circos-course/session/1/3/etc/
circos-course/session/1/3/etc/circos.conf
circos-course/session/1/3/etc/ideogram.conf
circos-course/session/1/4/
circos-course/session/1/4/circos.png
circos-course/session/1/4/etc/
circos-course/session/1/4/etc/circos.conf
circos-course/session/1/4/etc/ideogram.conf
circos-course/session/1/5/
circos-course/session/1/5/circos.png
circos-course/session/1/5/etc/
circos-course/session/1/5/etc/circos.conf
circos-course/session/1/5/etc/ideogram.conf
circos-course/session/1/6/
circos-course/session/1/6/circos.png
circos-course/session/1/6/etc/
circos-course/session/1/6/etc/break.conf
circos-course/session/1/6/etc/circos.conf
circos-course/session/1/6/etc/ideogram.conf
circos-course/session/1/7/
circos-course/session/1/7/circos.png
circos-course/session/1/7/etc/
circos-course/session/1/7/etc/break.conf
circos-course/session/1/7/etc/circos.conf
circos-course/session/1/7/etc/ideogram.conf
circos-course/session/1/8/
circos-course/session/1/8/circos.png
circos-course/session/1/8/etc/
circos-course/session/1/8/etc/break.conf
circos-course/session/1/8/etc/circos.conf
circos-course/session/1/8/etc/ideogram.conf
circos-course/session/1/9/
circos-course/session/1/9/circos.png
circos-course/session/1/9/etc/
circos-course/session/1/9/etc/circos.conf
circos-course/session/1/9/etc/ideogram.conf
circos-course/session/1/9/misc/
circos-course/session/1/9/misc/bands.png
circos-course/session/1/data/
circos-course/session/1/data/highlight.txt
circos-course/session/1/data/karyotype.5chr.banded.txt
circos-course/session/1/data/karyotype.5chr.txt
circos-course/session/1/etc/
circos-course/session/1/etc/ideogram.conf
circos-course/session/1/etc/ticks.conf
circos-course/session/1/img/
circos-course/session/1/img/1.png
circos-course/session/1/img/10.png
circos-course/session/1/img/11.png
circos-course/session/1/img/12.png
circos-course/session/1/img/2.png
circos-course/session/1/img/3.png
circos-course/session/1/img/4.png
circos-course/session/1/img/5.png
circos-course/session/1/img/6.png
circos-course/session/1/img/7.png
circos-course/session/1/img/8.png
circos-course/session/1/img/9.png
circos-course/session/1/img/copyimg
circos-course/session/1/run
circos-course/session/2/
circos-course/session/2/1/
circos-course/session/2/1/circos.png
circos-course/session/2/1/etc/
circos-course/session/2/1/etc/circos.conf
circos-course/session/2/1/misc/
circos-course/session/2/1/misc/brewer-examples.png
circos-course/session/2/1/misc/brewer-palettes-swatches.pdf
circos-course/session/2/1/misc/brewer-spectral-11.png
circos-course/session/2/1/misc/brewer.png
circos-course/session/2/1/misc/brewer.psd
circos-course/session/2/1/misc/circos-annot.png
circos-course/session/2/1/misc/circos-annot.psd
circos-course/session/2/1/misc/tracks.ai
circos-course/session/2/1/misc/ucsc.luminance.norm.png
circos-course/session/2/2/
circos-course/session/2/2/circos.png
circos-course/session/2/2/etc/
circos-course/session/2/2/etc/circos.conf
circos-course/session/2/2/etc/histograms.conf
circos-course/session/2/2/img/
circos-course/session/2/2/img/circos-01.png
circos-course/session/2/2/img/circos-02.png
circos-course/session/2/2/img/circos-03.png
circos-course/session/2/2/img/circos-04.png
circos-course/session/2/3/
circos-course/session/2/3/circos.png
circos-course/session/2/3/etc/
circos-course/session/2/3/etc/circos.conf
circos-course/session/2/3/etc/heatmaps.conf
circos-course/session/2/3/img/
circos-course/session/2/3/img/circos-01.png
circos-course/session/2/3/img/circos-02.png
circos-course/session/2/3/img/circos-03.png
circos-course/session/2/3/img/circos-04.png
circos-course/session/2/3/misc/
circos-course/session/2/3/misc/brewer-spectral-11
circos-course/session/2/3/misc/brewer-spectral-11.png
circos-course/session/2/3/misc/brewer-spectral-11.psd
circos-course/session/2/3/misc/heatmap-log-mapping.ai
circos-course/session/2/3/misc/heatmap-log-mapping.png
circos-course/session/2/3/misc/heatmap-log-mapping.psd
circos-course/session/2/3/misc/s3-brewer.png
circos-course/session/2/3/misc/scale-log-base.png
circos-course/session/2/3/misc/scale-log-base.psd
circos-course/session/2/4/
circos-course/session/2/4/circos.png
circos-course/session/2/4/etc/
circos-course/session/2/4/etc/circos.conf
circos-course/session/2/4/etc/links.conf
circos-course/session/2/4/img/
circos-course/session/2/4/img/circos-01.png
circos-course/session/2/4/img/circos-02.png
circos-course/session/2/4/misc/
circos-course/session/2/4/misc/link-as-curve.png
circos-course/session/2/4/misc/s3-curve.ai
circos-course/session/2/4/misc/s3-curve.png
circos-course/session/2/5/
circos-course/session/2/5/circos.png
circos-course/session/2/5/etc/
circos-course/session/2/5/etc/circos.conf
circos-course/session/2/5/etc/histograms.conf
circos-course/session/2/5/img/
circos-course/session/2/5/img/circos-01.png
circos-course/session/2/5/img/circos-02.png
circos-course/session/2/5/misc/
circos-course/session/2/5/misc/s3-5-zoom.png
circos-course/session/2/5/misc/s3-5-zoom.psd
circos-course/session/2/6/
circos-course/session/2/6/circos.png
circos-course/session/2/6/etc/
circos-course/session/2/6/etc/circos.conf
circos-course/session/2/6/etc/tiles.conf
circos-course/session/2/6/img/
circos-course/session/2/6/img/circos-01.png
circos-course/session/2/6/img/circos-02.png
circos-course/session/2/6/img/circos-03.png
circos-course/session/2/6/misc/
circos-course/session/2/6/misc/s3-tiles.png
circos-course/session/2/6/misc/stacking.psd
circos-course/session/2/6/misc/tile.psd
circos-course/session/2/7/
circos-course/session/2/7/circos.png
circos-course/session/2/7/etc/
circos-course/session/2/7/etc/circos.conf
circos-course/session/2/7/etc/highlights.conf
circos-course/session/2/7/img/
circos-course/session/2/7/img/circos-01.png
circos-course/session/2/7/img/circos-02.png
circos-course/session/2/7/img/circos-03.png
circos-course/session/2/7/misc/
circos-course/session/2/7/misc/highlight.ai
circos-course/session/2/7/misc/highlight.png
circos-course/session/2/8/
circos-course/session/2/8/circos.png
circos-course/session/2/8/etc/
circos-course/session/2/8/etc/circos.conf
circos-course/session/2/8/img/
circos-course/session/2/8/img/circos-01.png
circos-course/session/2/8/img/circos-02.png
circos-course/session/2/8/img/circos-03.png
circos-course/session/2/data/
circos-course/session/2/data/both.cons.2e6.avg.txt
circos-course/session/2/data/both.cons.2e6.danrer.avg.txt
circos-course/session/2/data/both.cons.2e6.fr.avg.txt
circos-course/session/2/data/both.cons.2e6.max.txt
circos-course/session/2/data/both.cons.2e6.min.txt
circos-course/session/2/data/both.cons.2e6.rhe.avg.txt
circos-course/session/2/data/both.cons.2e6.rn.avg.txt
circos-course/session/2/data/highlight.max.top20.txt
circos-course/session/2/data/highlight.min.top20.txt
circos-course/session/2/data/highlight.txt
circos-course/session/2/data/links.density.stacked.txt
circos-course/session/2/data/links.density.txt
circos-course/session/2/data/links.txt
circos-course/session/2/data/tiles.txt
circos-course/session/2/data/ucsc/
circos-course/session/2/data/ucsc/bincons
circos-course/session/2/data/ucsc/create.tracks
circos-course/session/2/data/ucsc/hg18.mm.chr1.txt
circos-course/session/2/data/ucsc/hg18.mm.chr2.txt
circos-course/session/2/data/ucsc/makelinks
circos-course/session/2/data/ucsc/maketiles
circos-course/session/2/data/ucsc/multiz.hg18.chr1.txt
circos-course/session/2/data/ucsc/multiz.hg18.chr2.txt
circos-course/session/2/data/ucsc/multiz.mm9.chr1.txt
circos-course/session/2/data/ucsc/multiz.mm9.chr2.txt
circos-course/session/2/data/ucsc/readme.txt
circos-course/session/2/etc/
circos-course/session/2/etc/ideogram.conf
circos-course/session/2/etc/karyotype.and.layout.conf
circos-course/session/2/etc/ticks.conf
circos-course/session/2/img/
circos-course/session/2/img/1.png
circos-course/session/2/img/2.png
circos-course/session/2/img/3.png
circos-course/session/2/img/4.png
circos-course/session/2/img/5.png
circos-course/session/2/img/6.png
circos-course/session/2/img/7.png
circos-course/session/2/img/8.png
circos-course/session/2/img/copyimg
circos-course/session/2/run
circos-course/session/3/
circos-course/session/3/1/
circos-course/session/3/1/circos.png
circos-course/session/3/1/etc/
circos-course/session/3/1/etc/circos.conf
circos-course/session/3/1/misc/
circos-course/session/3/1/misc/links.png
circos-course/session/3/1/misc/ribbon.png
circos-course/session/3/2/
circos-course/session/3/2/circos.png
circos-course/session/3/2/etc/
circos-course/session/3/2/etc/circos.conf
circos-course/session/3/2/etc/circos.png
circos-course/session/3/2/etc/links.conf
circos-course/session/3/3/
circos-course/session/3/3/circos.png
circos-course/session/3/3/etc/
circos-course/session/3/3/etc/circos.conf
circos-course/session/3/4/
circos-course/session/3/4/circos.png
circos-course/session/3/4/etc/
circos-course/session/3/4/etc/circos.conf
circos-course/session/3/4/etc/links.conf
circos-course/session/3/4/misc/
circos-course/session/3/4/misc/bundles.ai
circos-course/session/3/4/misc/bundles.png
circos-course/session/3/4/misc/bundles.psd
circos-course/session/3/5/
circos-course/session/3/5/circos.png
circos-course/session/3/5/etc/
circos-course/session/3/5/etc/circos.conf
circos-course/session/3/5/etc/histograms.conf
circos-course/session/3/5/misc/
circos-course/session/3/5/misc/brewer-colorlist.psd
circos-course/session/3/5/misc/bundles.psd
circos-course/session/3/6/
circos-course/session/3/6/circos.png
circos-course/session/3/6/etc/
circos-course/session/3/6/etc/circos.conf
circos-course/session/3/6/etc/scatter.conf
circos-course/session/3/7/
circos-course/session/3/7/circos.png
circos-course/session/3/7/etc/
circos-course/session/3/7/etc/circos.conf
circos-course/session/3/7/etc/heatmap.conf
circos-course/session/3/8/
circos-course/session/3/8/circos.png
circos-course/session/3/8/etc/
circos-course/session/3/8/etc/circos.conf
circos-course/session/3/data/
circos-course/session/3/data/bundles.0.txt
circos-course/session/3/data/bundles.1.txt
circos-course/session/3/data/bundles.2.txt
circos-course/session/3/data/bundles.3.txt
circos-course/session/3/data/bundles.4.txt
circos-course/session/3/data/bundles.5.txt
circos-course/session/3/data/bundles.txt
circos-course/session/3/data/cd
circos-course/session/3/data/create.tracks
circos-course/session/3/data/heatmap.1.txt
circos-course/session/3/data/heatmap.10.txt
circos-course/session/3/data/heatmap.11.txt
circos-course/session/3/data/heatmap.12.txt
circos-course/session/3/data/heatmap.13.txt
circos-course/session/3/data/heatmap.14.txt
circos-course/session/3/data/heatmap.15.txt
circos-course/session/3/data/heatmap.16.txt
circos-course/session/3/data/heatmap.17.txt
circos-course/session/3/data/heatmap.18.txt
circos-course/session/3/data/heatmap.19.txt
circos-course/session/3/data/heatmap.2.txt
circos-course/session/3/data/heatmap.3.txt
circos-course/session/3/data/heatmap.4.txt
circos-course/session/3/data/heatmap.5.txt
circos-course/session/3/data/heatmap.6.txt
circos-course/session/3/data/heatmap.7.txt
circos-course/session/3/data/heatmap.8.txt
circos-course/session/3/data/heatmap.9.txt
circos-course/session/3/data/highlight.hs.txt
circos-course/session/3/data/highlight.lum80.txt
circos-course/session/3/data/highlight.txt
circos-course/session/3/data/histogram.hs.stacked.norm.txt
circos-course/session/3/data/histogram.hs.stacked.txt
circos-course/session/3/data/histogram.hs.txt
circos-course/session/3/data/histogram.mm.bundles.txt
circos-course/session/3/data/histogram.mm.txt
circos-course/session/3/data/links.txt
circos-course/session/3/data/make.bins
circos-course/session/3/data/make.bundles
circos-course/session/3/data/make.heatmaps
circos-course/session/3/data/scatter.cons.txt
circos-course/session/3/etc/
circos-course/session/3/etc/ideogram.conf
circos-course/session/3/etc/image.conf
circos-course/session/3/etc/karyotype.and.layout.conf
circos-course/session/3/etc/ticks.conf
circos-course/session/3/img/
circos-course/session/3/img/1.png
circos-course/session/3/img/2.png
circos-course/session/3/img/3.png
circos-course/session/3/img/4.png
circos-course/session/3/img/5.png
circos-course/session/3/img/6.png
circos-course/session/3/img/7.png
circos-course/session/3/img/8.png
circos-course/session/3/img/copyimg
circos-course/session/3/run
circos-course/session/4/
circos-course/session/4/1/
circos-course/session/4/1/circos.png
circos-course/session/4/1/etc/
circos-course/session/4/1/etc/circos.conf
circos-course/session/4/1/etc/ideogram.conf
circos-course/session/4/1.solution/
circos-course/session/4/1.solution/circos.png
circos-course/session/4/1.solution/etc/
circos-course/session/4/1.solution/etc/circos.conf
circos-course/session/4/1.solution/etc/ideogram.conf
circos-course/session/4/2/
circos-course/session/4/2/circos.png
circos-course/session/4/2/etc/
circos-course/session/4/2/etc/circos.conf
circos-course/session/4/2/etc/ideogram.conf
circos-course/session/4/2.solution/
circos-course/session/4/2.solution/circos.png
circos-course/session/4/2.solution/etc/
circos-course/session/4/2.solution/etc/circos.conf
circos-course/session/4/2.solution/etc/ideogram.conf
circos-course/session/4/3/
circos-course/session/4/3/circos.png
circos-course/session/4/3/etc/
circos-course/session/4/3/etc/circos.conf
circos-course/session/4/3/etc/ideogram.conf
circos-course/session/4/3.solution/
circos-course/session/4/3.solution/circos.png
circos-course/session/4/3.solution/etc/
circos-course/session/4/3.solution/etc/circos.conf
circos-course/session/4/3.solution/etc/ideogram.conf
circos-course/session/4/4/
circos-course/session/4/4/circos.png
circos-course/session/4/4/etc/
circos-course/session/4/4/etc/circos.conf
circos-course/session/4/4/etc/ideogram.conf
circos-course/session/4/4.solution/
circos-course/session/4/4.solution/circos.png
circos-course/session/4/4.solution/etc/
circos-course/session/4/4.solution/etc/circos.conf
circos-course/session/4/4.solution/etc/ideogram.conf
circos-course/session/4/data/
circos-course/session/4/data/CIRCOS/
circos-course/session/4/data/CIRCOS/3SPEC_newCOORD
circos-course/session/4/data/CIRCOS/col1et2.pl
circos-course/session/4/data/CIRCOS/colmn.pl
circos-course/session/4/data/CIRCOS/CONSERVATION/
circos-course/session/4/data/CIRCOS/CONSERVATION/3SPEC_newCOORD
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circos-course/session/examples/15/
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circos-course/session/examples/16/
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circos-course/session/examples/2/
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circos-course/session/examples/21/data/text.genes.txt
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circos-course/session/examples/22/
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circos-course/session/examples/4/
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circos-course/session/examples/6/
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circos-course/session/examples/7/
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circos-course/session/examples/8/
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circos-course/session/examples/9/data/links.txt
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circos-course/session/examples/data/genes/
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