如何快速运行sparCC？

1. ERROR happened when I run fastspar and fastspar_bootstrap command

• ERROR: fastspar: /home/×××/miniconda3/bin/…/lib/libgomp.so.1: version ‘GOMP_4.0’ not found (required by fastspar)
• SOLUTION: conda install -c conda-forge libgomp
• ERROR: libmkl_rt.so: cannot open shared object file: No such file or directory
  
• SOLUTION: conda install mkl

2. Python运行脚本

#change the workdirectory to the path of my OTU TABLE
import os
chd = os.chdir('/home/hutianlong/Desktop/')
CURR_DIR = os.getcwd()
print(CURR_DIR)

%%bash
fastspar --otu_table ./nifh.txt \
         --correlation median_correlation.tsv \
         --covariance median_covariance.tsv \
         --iterations 50 \
         --threads 10

mkdir bootstrap_counts
fastspar_bootstrap --otu_table ./nifh.txt \
                   --number 1000 \
                   --prefix bootstrap_counts/nifh_data \
                   --threads 10

fastspar_pvalues --otu_table tests/data/fake_data.tsv \
                 --correlation median_correlation.tsv \
                 --prefix bootstrap_correlation/cor_fake_data_ \
                 --permutations 1000 \
                 --outfile pvalues.tsv \
                 --threads 10