infercnv安装全流程（包含jags等所有踩坑指南）

在slurm服务器安装infercnv过程中，会遇到rjags, LAPACK library, openblas相关bug，以下为安装全流程。

mkdir /share/home/usrname/JAGS-4.3.2
tar -zxf ./jags_4.3.2.orig.tar.gz
cd ~/JAGS-4.3.2
./configure --prefix=/share/home/usrname/JAGS-4.3.2/ --libdir=/share/home/usrname/JAGS-4.3.0/lib64
make
make install

遇到报错 configure: error: "You need to install the LAPACK library"   https://github.com/Reference-LAPACK/lapack/archive/refs/tags/v3.10.0.tar.gz 下载lapack包

tar -zxvf lapack-3.10.0.tar.gz
cd ~/lapack-3.10.0
cp ~/lapack-3.10.0/INSTALL/make.inc.gfortran  ~/lapack-3.10.0/make.inc
vim ~/lapack-3.10.0/make.inc

 

cd ~/lapack-3.10.0/BLAS
make
cd ~/lapack-3.10.0/CBLAS
make
mkdir lib
cp ~/lapack-3.10.0/libcblas.a  ~/lapack-3.10.0/CBLAS/lib/
cd ~/lapack-3.10.0/CBLAS/lib/
ar -x libcblas.a
conda install -c conda-forge openblas
gfortran ~/miniconda3/envs/R/lib/libopenblas.so -shared -o libcblas.so *.o

 再重新进行前面的jags安装部分，安装好之后，conda安装rjags

conda install -c conda-forge r-rjags

library("rjags")
BiocManager::install("infercnv")