R语言【paleobioDB】——pbdb_taxa()：获得多个类群名的基本信息

 Package paleobioDB version 0.7.0

paleobioDB 包在2020年已经停止更新，该包依赖PBDB v1 API。

可以选择在Index of /src/contrib/Archive/paleobioDB (r-project.org)下载安装包后，执行本地安装。

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Usage

pbdb_taxa (...)

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Arguments

 参数【...】：可通过 API 调用的参数。所有可用参数详见 PBDB Data Service: Lists of taxa。

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Value

返回一组类群的基本信息，一个数据帧。

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Example

library(paleobioDB)
library(RCurl)

options(RCurlOptions = list(cainfo = system.file("CurlSSL", "cacert.pem", package = "RCurl")))

pbdb_taxa (name="Canidae", vocab="pbdb", 
show=c("attr", "app", "size", "nav"))



  taxon_no orig_no record_type   rank taxon_name common_name
1    41189   41189       taxon family    Canidae       canid
   attribution     status parent_no reference_no is_extant
1 Fischer 1817 belongs to     36905         4783         1
  firstapp_ea firstapp_la lastapp_ea lastapp_la size extant_size
1    48.60000    40.40000    0.01170    0.00000  429         126
  parent_name parent_rank kingdom_no  kingdom phylum_no   phylum
1   Carnivora       order      67091 Animalia     33815 Chordata
  phylum_count class_no    class class_count order_no     order
1            0    36651 Mammalia           0    36905 Carnivora
  order_count family_no  family family_count genus_count
1           0     41189 Canidae            0          76

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Page

function (...) 
{
    l <- list(...)
    .pbdb_query("taxa/list", query = l)
}