anchorwave安装流程

1、使用源代码安装 

安装的条件：

1.1.存在软件minimap2或者GMAP

1.2.Linux系统

#安装minimap2
wget https://github.com/lh3/minimap2/releases/download/v2.17/minimap2-2.17_x64-linux.tar.bz2
tar -jxvf minimap2-2.17_x64-linux.tar.bz2
cd minimap2-2.17_x64-linux/

#编译anchorwave
git clone https://github.com/baoxingsong/anchorwave.git
cd anchorwave
cmake ./

2.使用conda进行安装

#下载并安装conda
wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh
bash Miniconda3-latest-Linux-x86_64.sh
#查看conda 并创建conda环境
conda --version 
conda create --name conda1
#激活conda并添加配置源
conda activate
conda config --add channels https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/free/
conda config --add channels https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main/
conda config --add channels https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda/
conda config --set show_channel_urls yes
#安装anchorwave
conda install -c bioconda -c conda-forge anchorwave

3.使用docker安装

#安装anchorwave
docker build -f docker/Dockerfile -t anchorwave ./

#检查是否安装成功
docker run -it anchorwave anchorwave