FPKM,RPKM,RPM以及TPM的关系之见解
RPKM: Reads Per Kilobase of exon model per Million mapped reads (每千个碱基的转录每百万映射读取的reads)
FPKM: Fragments Per Kilobase of exon model per Million mapped fragments(每千个碱基的转录每百万映射读取的fragments)
RPM/CPM: Reads/Counts of exon model per Million mapped reads (每百万映射读取的reads)
TPM:Transcripts Per Kilobase of exon model per Million mapped reads (每千个碱基的转录每百万映射读取的Transcripts)
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RPKM (Reads Per Kilobase Million)
FPKM (Fragments Per Kilobase Million)
TPM(Transcripts Per Kilobase Million)
RPM (Reads per million)
CPM (Counts per million)
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FPKM (推荐软件,cufflinks/Stringtie)和RPKM (推荐软件,Range/Deseq)的计算方法基本一致,公式如下(外显子的表达):
RPKM= total exon reads/ (mappe