在基因组组装之前需要做!
进入conda环境
conda activate kat
K-mer comparison tool.
Creates a matrix of shared K-mers between two (or three) sequence files or hashes.
kat comp -t 10 -n -o katcomp /media/aa/DATA/SZQ2/bj/my/genome/5.1210/01cleandata/A5.1210.L350_FDSW22H000294-3r_1.fq.clean /media/aa/DATA/SZQ2/bj/my/genome/5.1210/01cleandata/A5.1210.L350_FDSW22H000294-3r_2.fq.clean
plot: Plotting tools.
Contains several plotting tools to visualise K-mer and compare distributions.
kat plot spectra-mx -i -x 200 -o kat_spectra.png katcomp-main.mx
K-mer GC Processor.
Creates a matrix of the number of K-mers found given a GC count and a K-mer count.
kat gcp -t 10 -m 27 /media/aa/DATA/SZQ2/bj/my/genome/5.1210/01cleandata/A5.1210.L350_FDSW22H000294-3r_1.fq.clean /media/aa/DATA/SZQ2/bj/my/genome/5.1210/01cleandata/A5.1210.L350_FDSW22H000294-3r_2.fq.clean