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> ## 用拿到的确定的(第N版)celltype进行拟混池重复 > library('BSgenome.Hsapiens.UCSC.hg19') > getCellColData(projHeme2)
> projHeme2 <- addGroupCoverages(ArchRProj=projHeme2, groupBy="celltype") #构建拟混池重复 ArchR logging to : ArchRLogs/ArchR-addGroupCoverages-46462edece89-Date-2024-04-22_Time-21-20-26.log If there is an issue, please report to github with logFile! 2024-04-22 21:21:09 : Creating Coverage Files!, 0.723 mins elapsed. 2024-04-22 21:21:09 : Batch Execution w/ safelapply!, 0.723 mins elapsed. 2024-04-22 21:25:08 : Adding Kmer Bias to Coverage Files!, 4.705 mins elapsed. 2024-04-22 21:29:29 : Finished Creation of Coverage Files!, 9.057 mins elapsed. ArchR logging successful to : ArchRLogs/ArchR-addGroupCoverages-46462edece89-Date-2024-04-22_Time-21-20-26.log
> projHeme2 <- addReproduciblePeakSet( #添加可再现峰集 + ArchRProj = projHeme2, + groupBy="celltype", + maxPeaks = 200000, + pathToMacs2 = "/home/u37189/miniconda3/envs/Rlibrary/bin/macs2") ArchR logging to : ArchRLogs/ArchR-addReproduciblePeakSet-46463d5f2b4a-Date-2024-04-22_Time-21-31-10.log If there is an issue, please report to github with logFile! 2024-04-22 21:31:13 : Peak Calling Parameters!, 0.045 mins elapsed. Group nCells nCellsUsed nReplicates nMin nMax maxPeaks B cell B cell 1898 1550 5 81 500 200000 Basophil Basophil 560 538 4 91 185 200000 CD4M CD4M 3578 2138 5 194 500 200000 C