一:最近,KEGG用起来会出现报错,如下所示:
fail to download KEGG data...
Error in download.KEGG.Path(species) :
'species' should be one of organisms listed in 'http://www.genome.jp/kegg/catalog/org_list.html'...
In addition: Warning message:
In utils::download.file(url, quiet = quiet, method = "libcurl", :
URL 'https://rest.kegg.jp/link/hsa/pathway': status was 'Failure when receiving data from the peer'
网上也有很多比较好的,也可能行之有效的方法,比如:
1. 建明老师的方法是:
library(R.utils)
R.utils::setOption("clusterProfiler.download.method",'auto')
2.Y叔的:
options(clusterProfiler.download.method = "wininet")
3.或者改用其他下载方式:
目前的下载方式有“internal”、“wininet”(仅限Windows)、“libcurl”、“wget”和“curl”,其中有一个值“auto”:参见‘Details’和‘Note’。
由于的作者在linux上运行R&#