三代测序数据分析之文献推荐

三代测序数据分析之文献推荐

 (2018-07-20 09:03:47)

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1：下面这一篇是使用了目前可用的技术测序一个植物基因组并比较优劣

Paajanen P, Kettleborough G, Lopez-Girona E, et al. A critical comparison of technologies for a plant genome sequencing project[J]. bioRxiv, 2017: 201830.

 

2：下面这是2篇关于植物基因组的综述

Li F W, Harkess A. A guide to sequence your favorite plant genomes[J]. Applications in plant sciences, 2018, 6(3): e1030.

Wendel J F, Jackson S A, Meyers B C, et al. Evolution of plant genome architecture[J]. Genome biology, 2016, 17(1): 37.

 

 

3：下面是关于三代测序数据的组装方法比较

Jayakumar V, Sakakibara Y. Comprehensive evaluation of non-hybrid genome assembly tools for third-generation PacBio long-read sequence data[J]. Briefings in bioinformatics, 2017.

 

4：下面这一篇是关于三代测序数据分析的软件的综述文章不仅仅是基因组组装还包含三代全长转录组

Sedlazeck F J, Lee H, Darby C A, et al. Piercing the dark matter: bioinformatics of long-range sequencing and mapping[J]. Nature Reviews Genetics, 2018: 1.

 

5：三代和hi-c测序技术的完美结合的文章

Kronenberg Z N, Hall R J, Hiendleder S, et al. FALCON-Phase: Integrating PacBio and Hi-C data for phased diploid genomes[J]. bioRxiv, 2018: 327064.

 

6：三代测序数据在医学方面的应用综述文章

Ardui S, Ameur A, Vermeesch J R, et al. Single molecule real-time (SMRT) sequencing comes of age: applications and utilities for medical diagnostics[J]. Nucleic acids research, 2018, 46(5): 2159-2168.

 

7：如果你有两个亲本的二代数据，结合F1子代的三代可以得到完整二倍体分型的组装结果

Koren S, Rhie A, Walenz B P, et al. Complete assembly of parental haplotypes with trio binning[J]. bioRxiv, 2018: 271486.